Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACM0P2_RS14765 Genome accession   NZ_CP183209
Coordinates   3334468..3335676 (+) Length   402 a.a.
NCBI ID   WP_419226750.1    Uniprot ID   -
Organism   Alteromonas sp. OM2203     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3329468..3340676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0P2_RS14740 (ACM0P2_14740) ampE 3330422..3331339 (-) 918 WP_173359103.1 beta-lactamase regulator AmpE -
  ACM0P2_RS14745 (ACM0P2_14745) ampD 3331382..3331921 (-) 540 WP_173359104.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACM0P2_RS14750 (ACM0P2_14750) - 3332138..3332656 (+) 519 WP_159117906.1 retropepsin-like aspartic protease family protein -
  ACM0P2_RS14755 (ACM0P2_14755) nadC 3332688..3333542 (+) 855 WP_173359105.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACM0P2_RS14760 (ACM0P2_14760) - 3333942..3334391 (+) 450 WP_419226749.1 pilin -
  ACM0P2_RS14765 (ACM0P2_14765) pilC 3334468..3335676 (+) 1209 WP_419226750.1 type II secretion system F family protein Machinery gene
  ACM0P2_RS14770 (ACM0P2_14770) pilD 3335819..3336724 (+) 906 WP_173359107.1 prepilin peptidase Machinery gene
  ACM0P2_RS14775 (ACM0P2_14775) coaE 3336838..3337452 (+) 615 WP_419226751.1 dephospho-CoA kinase -
  ACM0P2_RS14780 (ACM0P2_14780) zapD 3337676..3338428 (+) 753 WP_173359109.1 cell division protein ZapD -
  ACM0P2_RS14785 (ACM0P2_14785) yacG 3338518..3338745 (+) 228 WP_105929610.1 DNA gyrase inhibitor YacG -
  ACM0P2_RS14790 (ACM0P2_14790) - 3338763..3339635 (+) 873 WP_173359110.1 aspartoacylase -
  ACM0P2_RS14795 (ACM0P2_14795) mutT 3339740..3340120 (-) 381 WP_159117898.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43513.17 Da        Isoelectric Point: 9.4595

>NTDB_id=1104500 ACM0P2_RS14765 WP_419226750.1 3334468..3335676(+) (pilC) [Alteromonas sp. OM2203]
MAKAATVFTWQGKDRNGQARKGEISATSLSEAKNLLRRQGISANKVKKLATPLFGGAKKITPADVSVISRQIATMLAAGV
TLIQSLEMIAQGHANPSMRKLLGEITEEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTVFVLGISRFVQDYGIFIAMGLAAAGFMFVRAH
RRSQKLRDSVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYRDAILYIRKEVAGGMPMH
VAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1104500 ACM0P2_RS14765 WP_419226750.1 3334468..3335676(+) (pilC) [Alteromonas sp. OM2203]
ATGGCAAAAGCAGCTACGGTATTCACTTGGCAGGGAAAAGATCGTAACGGTCAAGCTCGCAAAGGCGAAATTTCAGCTAC
TTCGCTCTCAGAAGCAAAAAACCTACTCCGGCGACAAGGGATCTCTGCTAACAAAGTAAAAAAACTCGCTACGCCTCTGT
TTGGTGGCGCCAAGAAAATTACTCCCGCTGATGTTTCTGTTATTTCACGGCAAATTGCTACCATGCTGGCCGCTGGTGTA
ACCCTTATTCAATCCTTGGAAATGATCGCGCAAGGTCACGCTAACCCTTCAATGCGCAAATTGCTTGGCGAAATTACTGA
AGAAGTTAAATCAGGTAATCCGCTATCTTCTGCATTGAGAAAACACCCCCTCTATTTTGATGATTTATACTGTGACTTGG
TTTACACCGGTGAACAGTCGGGTGCCCTTGAAACCATCTATGACCGAATTGCCACCTATAAAGAAAAAGCTGAAGCACTA
AAATCAAAAATCAAAAAAGCGATGTTCTACCCTATCGCCGTTTTGGTTGTTGCTTTTATTGTTACAACTATTCTGCTTAT
TTTCGTTGTGCCCCAGTTTGAAGAAATCTTTAGCAGCTTTGGCGCTGAGCTGCCCGCGTTTACCGTATTTGTGCTTGGGA
TTTCGCGTTTTGTGCAAGACTACGGCATTTTTATCGCCATGGGTCTAGCTGCTGCAGGCTTTATGTTTGTGCGTGCTCAT
AGGCGTAGCCAAAAGTTACGCGATAGTGTAGACCGCAACATTTTAAAAATTCCGGTTATAGGTGAAATACTTAAAAAAGC
AAGTATCGCCCGTTTTACACGTACTTTGGCCACTACCTTTGCGGCAGGTGTTCCGCTAATTGGTGCACTTGAATCGGCCG
CTGGGGCTTCCGGCAACGCAGTTTATCGAGACGCGATACTATATATTCGTAAAGAAGTGGCTGGCGGTATGCCTATGCAT
GTGGCTATGCGTGCGACTCAAGTGTTCCCCGACATGGTGACCCAGATGATTGCCATTGGTGAGGAGTCCGGTGCCGTGGA
CGAAATGCTAAGCAAGATAGCCACCATTTACGAAGCTGAAGTTGATGACATGGTAGACGGTTTAACCAGTTTGCTTGAAC
CTATGATCATGGCTGTACTTGGTGTGGTTATCGGTGGCCTGATTGTGGCCATGTACTTACCTATATTCGAAATGGGTAAC
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.446

98.756

0.587
  pilC Acinetobacter baumannii D1279779

51.861

100

0.52
  pilC Legionella pneumophila strain ERS1305867

52.525

98.507

0.517
  pilC Acinetobacter baylyi ADP1

52.261

99.005

0.517
  pilG Neisseria gonorrhoeae MS11

44.554

100

0.448
  pilC Vibrio cholerae strain A1552

45.202

98.507

0.445
  pilG Neisseria meningitidis 44/76-A

44.03

100

0.44
  pilC Vibrio campbellii strain DS40M4

42.677

98.507

0.42
  pilC Thermus thermophilus HB27

36.658

99.751

0.366

Multiple sequence alignment