Detailed information NTG1104501

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACM0P2_RS14770
• Genome accession: NZ_CP183209
• Coordinates: 3335819..3336724 (+)
• Length: 301 a.a.
• NCBI ID: WP_173359107.1
• Uniprot ID: -
• Organism: Alteromonas sp. OM2203
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3330819..3341724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM0P2_RS14745 (ACM0P2_14745)	ampD	3331382..3331921 (-)	540	WP_173359104.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACM0P2_RS14750 (ACM0P2_14750)	-	3332138..3332656 (+)	519	WP_159117906.1	retropepsin-like aspartic protease family protein	-
ACM0P2_RS14755 (ACM0P2_14755)	nadC	3332688..3333542 (+)	855	WP_173359105.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACM0P2_RS14760 (ACM0P2_14760)	-	3333942..3334391 (+)	450	WP_419226749.1	pilin	-
ACM0P2_RS14765 (ACM0P2_14765)	pilC	3334468..3335676 (+)	1209	WP_419226750.1	type II secretion system F family protein	Machinery gene
ACM0P2_RS14770 (ACM0P2_14770)	pilD	3335819..3336724 (+)	906	WP_173359107.1	prepilin peptidase	Machinery gene
ACM0P2_RS14775 (ACM0P2_14775)	coaE	3336838..3337452 (+)	615	WP_419226751.1	dephospho-CoA kinase	-
ACM0P2_RS14780 (ACM0P2_14780)	zapD	3337676..3338428 (+)	753	WP_173359109.1	cell division protein ZapD	-
ACM0P2_RS14785 (ACM0P2_14785)	yacG	3338518..3338745 (+)	228	WP_105929610.1	DNA gyrase inhibitor YacG	-
ACM0P2_RS14790 (ACM0P2_14790)	-	3338763..3339635 (+)	873	WP_173359110.1	aspartoacylase	-
ACM0P2_RS14795 (ACM0P2_14795)	mutT	3339740..3340120 (-)	381	WP_159117898.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 301 a.a.
• Molecular weight: 33159.20 Da
• Isoelectric Point: 5.2552

>NTDB_id=1104501 ACM0P2_RS14770 WP_173359107.1 3335819..3336724(+) (pilD) [Alteromonas sp. OM2203]
MDAIITLSQLYPAIFYCLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYESYFSDGANDGISTSANDKSATPDEPFNLVK
PDSTCPSCGHKIRAWENIPVISYLFLKGKCAKCKTGISIRYPLVELFTAIACTFAAFEFGVTSQALWAVAFTYVLVALLF
IDLDKMLLPDQLTLPLLWLGLLLSTQNIFVGTTDAIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTGWQ
GLPVIILLSSLVGAIAGILIMIIQNKGKSLAIPFGPYLAVAGWLTLLFKHEIITTYLDYVL

Nucleotide

• Length: 906 bp

>NTDB_id=1104501 ACM0P2_RS14770 WP_173359107.1 3335819..3336724(+) (pilD) [Alteromonas sp. OM2203]
ATGGATGCCATCATAACGCTTAGCCAGCTCTACCCCGCTATTTTCTATTGCCTTGTTTTCTTTGTAAGCCTAATGGTGGG
CAGCTTTTTAAATGTAGTAATTTACCGTTTGCCTATTATGATGGAGCGCAGCTGGCAGCAAGAGTATGAAAGCTATTTTA
GCGATGGCGCAAATGATGGTATTTCCACATCTGCTAATGATAAATCAGCCACGCCAGACGAGCCTTTTAACCTTGTAAAA
CCCGACAGTACCTGCCCAAGCTGCGGCCACAAAATTCGCGCGTGGGAAAATATTCCCGTTATCAGCTACCTGTTTTTAAA
AGGTAAATGCGCTAAATGCAAAACTGGGATTTCAATTCGCTACCCGCTTGTTGAGCTTTTCACAGCAATAGCTTGTACAT
TCGCGGCCTTTGAGTTTGGCGTTACGTCTCAAGCGCTGTGGGCTGTCGCGTTCACCTATGTGCTTGTTGCATTGCTATTT
ATTGATTTAGACAAAATGTTACTGCCCGACCAGCTCACCCTTCCTTTGCTTTGGCTTGGGCTGCTGTTAAGCACTCAAAA
CATTTTTGTTGGTACGACCGATGCAATCATTGGCGCAGCGGCAGGCTATTTAAGTTTATGGTCAGTATATTGGCTGTTTA
AGCTGGTTACAGGCAAGGAAGGCATGGGTTACGGCGACTTTAAATTGTTAGCTGCGCTCGGGGCATTTACCGGTTGGCAA
GGGCTGCCCGTTATTATATTGCTGTCATCTCTTGTTGGCGCGATTGCAGGTATTCTGATCATGATTATTCAGAACAAAGG
AAAGTCGTTAGCTATTCCTTTTGGTCCTTATCTCGCTGTAGCTGGATGGTTAACCCTGTTATTTAAACACGAAATTATTA
CCACATATTTAGACTATGTGCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (151-258)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.898	98.007	0.528
pilD	Vibrio campbellii strain DS40M4	53.741	97.674	0.525
pilD	Acinetobacter baumannii D1279779	49.823	94.02	0.468
pilD	Acinetobacter nosocomialis M2	49.47	94.02	0.465
pilD	Neisseria gonorrhoeae MS11	49.43	87.375	0.432