Detailed information NTG1103454

Bioinformatically predicted

Overview

• Name: comYA
• Type: Machinery gene
• Locus tag: ACNSPL_RS29525
• Genome accession: NZ_CP183002
• Coordinates: 5940802..5941773 (-)
• Length: 323 a.a.
• NCBI ID: WP_000250805.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain RKI 380DKa
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5935802..5946773

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNSPL_RS29500 (ACNSPL_29485)	-	5936511..5936750 (-)	240	WP_000217789.1	helix-turn-helix domain-containing protein	-
ACNSPL_RS29505 (ACNSPL_29490)	-	5936932..5937675 (+)	744	WP_001260003.1	XRE family transcriptional regulator	-
ACNSPL_RS29510 (ACNSPL_29495)	-	5937692..5938219 (+)	528	WP_000734160.1	hypothetical protein	-
ACNSPL_RS29515 (ACNSPL_29500)	-	5938343..5939788 (+)	1446	WP_000633502.1	recombinase family protein	-
ACNSPL_RS29520 (ACNSPL_29505)	comYB	5939865..5940908 (-)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACNSPL_RS29525 (ACNSPL_29510)	comYA	5940802..5941773 (-)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
ACNSPL_RS29530 (ACNSPL_29515)	-	5941946..5942311 (-)	366	WP_000285373.1	DUF1033 family protein	-
ACNSPL_RS29535 (ACNSPL_29520)	rpoC	5942425..5946105 (-)	3681	WP_000973343.1	DNA-directed RNA polymerase subunit beta'	-

Sequence

Protein

• Length: 323 a.a.
• Molecular weight: 36801.32 Da
• Isoelectric Point: 6.8469

>NTDB_id=1103454 ACNSPL_RS29525 WP_000250805.1 5940802..5941773(-) (comYA) [Klebsiella pneumoniae strain RKI 380DKa]
MVQSLAKQVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGIRGLYLFSGPVGSGKTTLMYQLASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF

Nucleotide

• Length: 972 bp

>NTDB_id=1103454 ACNSPL_RS29525 WP_000250805.1 5940802..5941773(-) (comYA) [Klebsiella pneumoniae strain RKI 380DKa]
ATGGTTCAATCATTAGCAAAGCAAGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTATAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTAGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCCCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAATTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (8-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYA	Streptococcus mutans UA159	68.81	96.285	0.663
comYA	Streptococcus mutans UA140	68.81	96.285	0.663
comYA	Streptococcus gordonii str. Challis substr. CH1	63.636	98.762	0.628
comGA/cglA/cilD	Streptococcus mitis NCTC 12261	62.701	96.285	0.604
comGA/cglA/cilD	Streptococcus pneumoniae Rx1	61.736	96.285	0.594
comGA/cglA/cilD	Streptococcus pneumoniae D39	61.736	96.285	0.594
comGA/cglA/cilD	Streptococcus pneumoniae R6	61.736	96.285	0.594
comGA/cglA/cilD	Streptococcus pneumoniae TIGR4	61.736	96.285	0.594
comGA/cglA	Streptococcus sobrinus strain NIDR 6715-7	61.935	95.975	0.594
comGA	Lactococcus lactis subsp. cremoris KW2	50.621	99.69	0.505