Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNI3D_RS08900 Genome accession   NZ_CP182343
Coordinates   1772716..1772961 (-) Length   81 a.a.
NCBI ID   WP_419766745.1    Uniprot ID   -
Organism   MAG: Arcobacter sp. isolate Pygsuia-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1767716..1777961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNI3D_RS08860 (ACNI3D_08860) ribA 1768233..1768796 (+) 564 WP_419766741.1 GTP cyclohydrolase II -
  ACNI3D_RS08865 (ACNI3D_08865) rsmG 1768796..1769380 (+) 585 WP_129099241.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ACNI3D_RS08870 (ACNI3D_08870) - 1769380..1769601 (+) 222 WP_129099242.1 PP0621 family protein -
  ACNI3D_RS08875 (ACNI3D_08875) - 1769598..1769969 (+) 372 WP_419766742.1 hypothetical protein -
  ACNI3D_RS08880 (ACNI3D_08880) - 1769972..1770118 (+) 147 WP_419766743.1 hypothetical protein -
  ACNI3D_RS08885 (ACNI3D_08885) glyS 1770111..1772126 (+) 2016 WP_419766744.1 glycine--tRNA ligase subunit beta -
  ACNI3D_RS08890 (ACNI3D_08890) - 1772136..1772276 (+) 141 WP_129099245.1 entericidin EcnAB -
  ACNI3D_RS08895 (ACNI3D_08895) - 1772301..1772582 (-) 282 WP_129099246.1 hypothetical protein -
  ACNI3D_RS08900 (ACNI3D_08900) comEA 1772716..1772961 (-) 246 WP_419766745.1 ComEA family DNA-binding protein Machinery gene
  ACNI3D_RS08905 (ACNI3D_08905) - 1773058..1773558 (-) 501 WP_419766746.1 nucleoside 2-deoxyribosyltransferase -
  ACNI3D_RS08910 (ACNI3D_08910) - 1773585..1774484 (-) 900 WP_419766747.1 uroporphyrinogen-III synthase -
  ACNI3D_RS08925 (ACNI3D_08925) - 1774850..1775881 (+) 1032 WP_419766748.1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II -
  ACNI3D_RS08930 (ACNI3D_08930) - 1775901..1776389 (-) 489 WP_129099271.1 hypothetical protein -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 9116.85 Da        Isoelectric Point: 9.2457

>NTDB_id=1101280 ACNI3D_RS08900 WP_419766745.1 1772716..1772961(-) (comEA) [MAG: Arcobacter sp. isolate Pygsuia-1]
MKIILMLTLFCLALFAIDINKASVEELKTLNGIGDKKAESIVQYRTQHKCFKNKDDLLNIKGIGKALLEKNEDKISFSAC
K

Nucleotide


Download         Length: 246 bp        

>NTDB_id=1101280 ACNI3D_RS08900 WP_419766745.1 1772716..1772961(-) (comEA) [MAG: Arcobacter sp. isolate Pygsuia-1]
ATGAAAATCATTTTGATGCTAACGCTGTTTTGTTTGGCTTTATTTGCAATTGACATAAATAAAGCTTCTGTTGAGGAATT
AAAAACTCTAAATGGGATTGGAGATAAAAAAGCTGAATCTATTGTTCAATATAGAACTCAACATAAATGTTTTAAAAATA
AAGATGACCTTCTAAATATAAAAGGTATAGGAAAAGCTCTTTTAGAAAAAAATGAAGATAAAATCTCATTTTCTGCTTGT
AAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

47.368

100

0.556
  comE Neisseria gonorrhoeae MS11

46.25

98.765

0.457
  comE Neisseria gonorrhoeae MS11

46.25

98.765

0.457
  comE Neisseria gonorrhoeae MS11

46.25

98.765

0.457
  comE Neisseria gonorrhoeae MS11

46.25

98.765

0.457
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

76.543

0.432
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

44

92.593

0.407
  comEA Vibrio cholerae C6706

49.206

77.778

0.383
  comEA Vibrio cholerae strain A1552

49.206

77.778

0.383
  comEA Vibrio campbellii strain DS40M4

48.387

76.543

0.37

Multiple sequence alignment