Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACNJYY_RS09835 Genome accession   NZ_CP182294
Coordinates   1812793..1814034 (+) Length   413 a.a.
NCBI ID   WP_416731553.1    Uniprot ID   -
Organism   Fictibacillus sp. JL2B1089     
Function   unknown (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1791094..1842103 1812793..1814034 within 0


Gene organization within MGE regions


Location: 1791094..1842103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJYY_RS09740 (ACNJYY_09740) asd 1791674..1792717 (+) 1044 WP_416731542.1 aspartate-semialdehyde dehydrogenase -
  ACNJYY_RS09745 (ACNJYY_09745) dapG 1792739..1794004 (+) 1266 WP_191753585.1 aspartate kinase -
  ACNJYY_RS09750 (ACNJYY_09750) dapA 1794017..1794886 (+) 870 WP_416731543.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACNJYY_RS09755 (ACNJYY_09755) - 1795370..1797037 (+) 1668 WP_144700688.1 ribonuclease J -
  ACNJYY_RS09760 (ACNJYY_09760) - 1797131..1797871 (+) 741 WP_144700686.1 ClpP family protease -
  ACNJYY_RS09765 (ACNJYY_09765) - 1797868..1798077 (+) 210 WP_416731544.1 YlzJ-like family protein -
  ACNJYY_RS09770 (ACNJYY_09770) - 1798197..1800557 (+) 2361 WP_416731545.1 DNA translocase FtsK -
  ACNJYY_RS09775 (ACNJYY_09775) - 1800754..1801479 (+) 726 WP_416731546.1 GntR family transcriptional regulator -
  ACNJYY_RS09780 (ACNJYY_09780) - 1801570..1802637 (+) 1068 WP_416731547.1 BMP family lipoprotein -
  ACNJYY_RS09785 (ACNJYY_09785) - 1802721..1804247 (+) 1527 WP_416731548.1 ABC transporter ATP-binding protein -
  ACNJYY_RS09790 (ACNJYY_09790) - 1804237..1805289 (+) 1053 WP_066393810.1 ABC transporter permease -
  ACNJYY_RS09795 (ACNJYY_09795) - 1805289..1806251 (+) 963 WP_197220803.1 ABC transporter permease -
  ACNJYY_RS09800 (ACNJYY_09800) yfmF 1806535..1807833 (+) 1299 WP_416731838.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  ACNJYY_RS09805 (ACNJYY_09805) yfmH 1807814..1809103 (+) 1290 WP_416731549.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACNJYY_RS09810 (ACNJYY_09810) ymfI 1809163..1809888 (+) 726 WP_416731550.1 elongation factor P 5-aminopentanone reductase -
  ACNJYY_RS09815 (ACNJYY_09815) - 1809958..1810215 (+) 258 WP_066393818.1 DUF3243 domain-containing protein -
  ACNJYY_RS09820 (ACNJYY_09820) - 1810350..1811126 (+) 777 WP_416731551.1 DUF3388 domain-containing protein -
  ACNJYY_RS09825 (ACNJYY_09825) - 1811145..1812017 (+) 873 WP_416731552.1 RodZ domain-containing protein -
  ACNJYY_RS09830 (ACNJYY_09830) pgsA 1812060..1812638 (+) 579 WP_066393829.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACNJYY_RS09835 (ACNJYY_09835) cinA 1812793..1814034 (+) 1242 WP_416731553.1 competence/damage-inducible protein A Machinery gene
  ACNJYY_RS09840 (ACNJYY_09840) recA 1814161..1815207 (+) 1047 WP_416731554.1 recombinase RecA Machinery gene
  ACNJYY_RS09845 (ACNJYY_09845) rny 1815673..1817238 (+) 1566 WP_066393834.1 ribonuclease Y -
  ACNJYY_RS09850 (ACNJYY_09850) spoVS 1817582..1817842 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -
  ACNJYY_RS09855 (ACNJYY_09855) - 1818198..1819940 (+) 1743 WP_416731555.1 2-oxoacid:acceptor oxidoreductase subunit alpha -
  ACNJYY_RS09860 (ACNJYY_09860) - 1819942..1820808 (+) 867 WP_137789604.1 2-oxoacid:ferredoxin oxidoreductase subunit beta -
  ACNJYY_RS09865 (ACNJYY_09865) tdh 1821118..1822158 (+) 1041 WP_416731556.1 L-threonine 3-dehydrogenase -
  ACNJYY_RS09870 (ACNJYY_09870) - 1822183..1823358 (+) 1176 WP_416731839.1 glycine C-acetyltransferase -
  ACNJYY_RS09875 (ACNJYY_09875) miaB 1823589..1825109 (+) 1521 WP_416731557.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACNJYY_RS09880 (ACNJYY_09880) - 1825109..1825543 (+) 435 WP_066393841.1 RicAFT regulatory complex protein RicA family protein -
  ACNJYY_RS09885 (ACNJYY_09885) cotE 1826010..1826582 (+) 573 WP_137789601.1 outer spore coat protein CotE -
  ACNJYY_RS09890 (ACNJYY_09890) mutS 1826686..1829277 (+) 2592 WP_416731558.1 DNA mismatch repair protein MutS -
  ACNJYY_RS09895 (ACNJYY_09895) mutL 1829292..1831184 (+) 1893 WP_416731559.1 DNA mismatch repair endonuclease MutL -
  ACNJYY_RS09900 (ACNJYY_09900) miaA 1831194..1832144 (+) 951 WP_416731560.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  ACNJYY_RS09905 (ACNJYY_09905) hfq 1832176..1832412 (+) 237 WP_066393852.1 RNA chaperone Hfq -
  ACNJYY_RS09910 (ACNJYY_09910) - 1832490..1833470 (-) 981 WP_416731561.1 tyrosine-type recombinase/integrase -
  ACNJYY_RS09915 (ACNJYY_09915) - 1833573..1834151 (+) 579 WP_416731562.1 YhcN/YlaJ family sporulation lipoprotein -
  ACNJYY_RS09920 (ACNJYY_09920) - 1834277..1834900 (-) 624 WP_416731563.1 YitT family protein -
  ACNJYY_RS09925 (ACNJYY_09925) spoVK 1835175..1836128 (+) 954 WP_416731564.1 stage V sporulation protein K -
  ACNJYY_RS09930 (ACNJYY_09930) hflX 1836168..1837424 (+) 1257 WP_416731565.1 GTPase HflX -
  ACNJYY_RS09935 (ACNJYY_09935) - 1837426..1838697 (+) 1272 WP_416731566.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  ACNJYY_RS09940 (ACNJYY_09940) - 1838828..1839229 (+) 402 WP_066393870.1 MerR family transcriptional regulator -
  ACNJYY_RS09945 (ACNJYY_09945) glnA 1839299..1840633 (+) 1335 WP_066393872.1 type I glutamate--ammonia ligase -
  ACNJYY_RS09950 (ACNJYY_09950) lexA 1841127..1841741 (-) 615 WP_416731567.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45295.41 Da        Isoelectric Point: 6.1855

>NTDB_id=1101017 ACNJYY_RS09835 WP_416731553.1 1812793..1814034(+) (cinA) [Fictibacillus sp. JL2B1089]
MNAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHSVAGDNENRLSSVIQTARSRSDLLIFTGGLGPTKDDLTKET
IAKLFQKALVHDEAALAYITNYFVQTNREMTPNNKKQALIIEGSAVLPNDNGMAPGMAFTHGNNTCILLPGPPSEMRPMF
NNYVIPFLYSKMDVQTKFHSRVLKFFGIGESVLETKLQDLIEKQSNPTIAPLASEHEVTIRLTASHHSETEAKRLLDEVE
QEVLSRTGSYFYGYDDETLENQTFDLLRDNKLTIASAESLTGGLFSKIITDFPGASSVFQGGAVVYSSAMKQSMLKVPQS
LITDHGVVSSQCAEWMAEQIKKQTKSGIGISFTGVAGPDAQEDKPAGTIFIGISIHDQTYSYSIKLAGSRKGIRERAVKH
GFRYLNQLVKEGQ

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1101017 ACNJYY_RS09835 WP_416731553.1 1812793..1814034(+) (cinA) [Fictibacillus sp. JL2B1089]
TTGAACGCAGAAATCATAGCAGTTGGCAGTGAACTTTTATTAGGACAGATCGCAAACACGAATGCTCAGTTTATTTCAAA
AGAGCTTGCTGAGATCGGAGTGAACGTATTTTATCACTCAGTAGCAGGTGATAACGAGAACCGTCTCTCATCAGTTATTC
AAACAGCCAGGTCTAGATCGGATCTGCTCATCTTTACGGGAGGTCTCGGACCAACTAAAGACGACCTGACGAAGGAAACA
ATCGCAAAACTATTTCAAAAGGCATTGGTCCATGATGAAGCTGCTTTAGCGTATATAACCAATTATTTTGTTCAAACCAA
TCGAGAGATGACACCGAACAATAAGAAGCAAGCTCTCATTATTGAAGGGTCTGCCGTACTGCCGAACGATAATGGTATGG
CACCTGGAATGGCGTTTACTCATGGTAACAACACGTGTATACTCCTGCCTGGACCGCCAAGCGAGATGAGACCTATGTTC
AACAACTATGTAATTCCTTTTCTTTATTCTAAAATGGATGTGCAGACAAAGTTTCATTCAAGGGTCTTGAAATTTTTTGG
GATCGGGGAATCGGTCTTAGAAACAAAGCTTCAGGATTTGATCGAGAAACAAAGCAATCCTACCATTGCGCCTCTAGCAT
CTGAACATGAGGTTACGATTCGGCTGACTGCATCGCACCATTCAGAAACTGAGGCAAAAAGACTGCTGGATGAAGTAGAA
CAAGAAGTTCTAAGCCGTACAGGTTCTTATTTTTATGGTTATGATGACGAAACGCTAGAGAATCAGACTTTCGATCTTCT
TCGAGATAATAAGCTGACGATCGCTTCAGCAGAGAGCTTGACTGGAGGTTTATTCAGCAAGATCATCACTGATTTTCCTG
GGGCATCTTCCGTGTTTCAAGGAGGAGCCGTCGTTTATTCAAGCGCAATGAAACAATCGATGCTTAAAGTACCTCAATCT
TTGATCACAGATCATGGTGTTGTCAGCTCACAATGTGCAGAATGGATGGCAGAGCAAATTAAAAAGCAGACAAAGTCTGG
TATCGGCATCAGCTTTACTGGTGTTGCGGGTCCTGATGCACAGGAAGACAAGCCTGCTGGAACAATTTTTATTGGCATAT
CGATACATGACCAAACGTATTCCTACTCCATAAAACTCGCAGGCTCAAGAAAAGGTATTCGTGAAAGAGCGGTTAAGCAT
GGATTTCGGTATTTAAATCAATTGGTCAAAGAAGGACAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.746

99.031

0.552
  cinA Streptococcus mitis NCTC 12261

47.242

100

0.477
  cinA Streptococcus mitis SK321

47.002

100

0.475
  cinA Streptococcus pneumoniae TIGR4

46.763

100

0.472
  cinA Streptococcus pneumoniae Rx1

46.523

100

0.47
  cinA Streptococcus pneumoniae R6

46.523

100

0.47
  cinA Streptococcus mutans UA159

47.087

99.758

0.47
  cinA Streptococcus pneumoniae D39

46.283

100

0.467
  cinA Streptococcus suis isolate S10

36.562

100

0.366

Multiple sequence alignment