Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABXS94_RS01500 Genome accession   NZ_AP031566
Coordinates   337379..338605 (-) Length   408 a.a.
NCBI ID   WP_004975864.1    Uniprot ID   A0A2A5PJ18
Organism   Acinetobacter towneri strain PT23-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332379..343605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS01475 (PT23B2_02820) - 333670..333993 (+) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -
  ABXS94_RS01480 (PT23B2_02830) rlmB 334182..334931 (+) 750 WP_004975856.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABXS94_RS01485 (PT23B2_02840) - 334975..335904 (+) 930 WP_004975858.1 DMT family transporter -
  ABXS94_RS01490 (PT23B2_02850) coaE 335910..336509 (-) 600 WP_353675424.1 dephospho-CoA kinase -
  ABXS94_RS01495 (PT23B2_02860) pilD 336519..337379 (-) 861 WP_353675425.1 A24 family peptidase Machinery gene
  ABXS94_RS01500 (PT23B2_02870) pilC 337379..338605 (-) 1227 WP_004975864.1 type II secretion system F family protein Machinery gene
  ABXS94_RS01505 (PT23B2_02880) pilB 338636..340348 (-) 1713 WP_004975865.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABXS94_RS01510 (PT23B2_02890) tpiA 340626..341417 (+) 792 WP_353675426.1 triose-phosphate isomerase -
  ABXS94_RS01515 (PT23B2_02900) secG 341431..341760 (+) 330 WP_004975868.1 preprotein translocase subunit SecG -
  ABXS94_RS01540 (PT23B2_02910) rimP 342712..343236 (+) 525 WP_004975871.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44996.52 Da        Isoelectric Point: 9.9487

>NTDB_id=109990 ABXS94_RS01500 WP_004975864.1 337379..338605(-) (pilC) [Acinetobacter towneri strain PT23-B2]
MAVKKAQMMPTFVYEGIDRKGAKLKGEIPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWMQKYWFILIIVIGVIIA
GFLETKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=109990 ABXS94_RS01500 WP_004975864.1 337379..338605(-) (pilC) [Acinetobacter towneri strain PT23-B2]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTCGTTTATGAAGGGATTGACCGCAAAGGGGCTAAGTTAAAAGGGGA
AATTCCAGCGCGTAATATGGCCTTGGCAAAGGTCACATTGCGTAAACAAGGGATTACCATCAAGACGATTCGCCAAAAGA
AAAAGAATATTCTTGAAGGCTTAATGAAAAAACGGGTGTCGACCTTAGACATCACTATTTTCACGCGTCAGCTTGCCACT
ATGATGAAAGCAGGTGTGCCTTTGGTACAAAGCTTTGAGATTGTTGCCGAAGGTCTTGAAAACCCCGCCATGCGTGAAGT
GGTTTTAGGCATTAAAGGTGAAGTGGAAGGCGGGAATACCTTTGCTGGCGCATTGCGTAAATATCCTCAATATTTTGACA
ACCTATTTTGTTCTTTGGTCGAATCTGGTGAACAATCGGGTGCCCTAGAAACCATGCTAGATCGTGTCGCGATCTATAAA
GAAAAGAGTGAGTTACTCAAACAAAAAATTAAAAAAGCCATGAAATACCCTGCAACGGTCATTGTGGTGGCCGTGATTGT
GACCATTATTTTGATGGTGAAAGTCGTACCTGTGTTTGAAGAGTTGTTTAGCTCTTTTGGTGCGGACTTGCCTGCCTTCA
CTAAAATGGTGGTGAACATGTCACAATGGATGCAGAAATACTGGTTTATTCTGATTATTGTGATTGGGGTCATCATTGCA
GGTTTCTTGGAAACTAAAAAACGCAGTAAAAAATTCCGTGACTTCTTAGACAAAGCGGCACTGAAAGCGCCTATTTTTGG
TGACTTGGTCTATAAAGCGATTATTGCACGTTATAGCCGTACTTTAGCCACTACTTTTGCTGCTGGTGTACCCTTAATTG
ATGCCTTGGAATCTACCGCTGGGGCAACCAATAATGTGGTCTATGAAGAAGCCGTGATGAAAATTCGTGATGATGTTGCG
ACAGGTCAACAGCTACAATTCGCCATGCGTGTCACCAATAAATTCCCGTCTATGGCCGTGCAAATGGTGGCGATTGGTGA
AGAGTCTGGTGCACTCGATGCCATGTTAGATAAAGTCGCAACCCACTATGAAAACGAAGTAGATAACGCAGTAGATGGTT
TAACCTCGATGATGGAACCTCTGATTATGTCTGTGTTAGGTATTTTAGTCGGTGGTTTGGTTGTGGCCATGTACCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PJ18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.99

100

0.88
  pilC Acinetobacter baylyi ADP1

83.578

100

0.836
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.51

0.593
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

42.079

99.02

0.417
  pilC Thermus thermophilus HB27

36.79

99.265

0.365

Multiple sequence alignment