Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABXS94_RS01495 Genome accession   NZ_AP031566
Coordinates   336519..337379 (-) Length   286 a.a.
NCBI ID   WP_353675425.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331519..342379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS01475 (PT23B2_02820) - 333670..333993 (+) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -
  ABXS94_RS01480 (PT23B2_02830) rlmB 334182..334931 (+) 750 WP_004975856.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABXS94_RS01485 (PT23B2_02840) - 334975..335904 (+) 930 WP_004975858.1 DMT family transporter -
  ABXS94_RS01490 (PT23B2_02850) coaE 335910..336509 (-) 600 WP_353675424.1 dephospho-CoA kinase -
  ABXS94_RS01495 (PT23B2_02860) pilD 336519..337379 (-) 861 WP_353675425.1 A24 family peptidase Machinery gene
  ABXS94_RS01500 (PT23B2_02870) pilC 337379..338605 (-) 1227 WP_004975864.1 type II secretion system F family protein Machinery gene
  ABXS94_RS01505 (PT23B2_02880) pilB 338636..340348 (-) 1713 WP_004975865.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABXS94_RS01510 (PT23B2_02890) tpiA 340626..341417 (+) 792 WP_353675426.1 triose-phosphate isomerase -
  ABXS94_RS01515 (PT23B2_02900) secG 341431..341760 (+) 330 WP_004975868.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31961.32 Da        Isoelectric Point: 8.0028

>NTDB_id=109989 ABXS94_RS01495 WP_353675425.1 336519..337379(-) (pilD) [Acinetobacter towneri strain PT23-B2]
MQELIAYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLNPEQAIIDESKITLSKPASTCPKCHHP
IRWCQNIPVLSWLVLRGKCSNCQNPISIRYPLVEVLTAVCALIVLAVFGPTVQMLFGLLLTYTLIALTFIDFDTQLLPDR
YTLPLAALGLAVNSYAIYTSPTSAIWGYVIGFLCLWVVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=109989 ABXS94_RS01495 WP_353675425.1 336519..337379(-) (pilD) [Acinetobacter towneri strain PT23-B2]
ATGCAAGAATTAATCGCGTACTTTATCCAAAATCCAACTGCGCTCTATATCGCAGTTGGACTTTTTAGTTTATGTATTGG
CAGTTTTTTGAATGTGGTGATTTATCGCACCCCAAAAATGATGGAGCAGGAATGGCGTAATGACTGTCAAATGTTGTTAA
ACCCTGAACAAGCCATTATTGATGAAAGCAAAATCACCCTGAGTAAACCTGCATCGACCTGCCCCAAATGTCATCACCCA
ATTCGTTGGTGTCAAAATATTCCTGTGCTGAGTTGGTTGGTATTACGCGGTAAATGTAGCAACTGCCAAAACCCGATCAG
CATACGTTATCCACTGGTTGAAGTATTAACCGCTGTTTGCGCCCTGATTGTGCTTGCGGTATTTGGCCCAACTGTACAAA
TGCTGTTTGGTTTGCTGCTCACTTATACCTTGATTGCACTCACCTTCATTGATTTTGATACACAACTCTTGCCAGACCGT
TACACCCTGCCTTTGGCTGCACTGGGTTTGGCAGTCAACAGCTATGCCATCTATACCTCACCGACATCGGCAATTTGGGG
TTATGTAATTGGCTTCCTATGTCTATGGGTGGTGTATTACCTGTTTAAAATCATCACAGGCAAAGAAGGCATGGGCTATG
GTGACTTCAAGCTCCTTGCCGCTTTAGGTGCATGGATGGGGCCGATGATGTTACCCCTGATTGTGCTACTATCGTCCTTA
GTTGGGGCTATTATTGGCATTATTCTGTTAAAAGTGCGTAAAGAAAACCAACCCTTTGCATTTGGTCCGTATATCGCCAT
TGCGGGCTGGATTGCCTTTTTATGGGGCGAGCAAATCATGAAAGTATATTTGGGACAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.053

99.65

0.808
  pilD Acinetobacter baumannii D1279779

80.702

99.65

0.804
  pilD Vibrio cholerae strain A1552

55.597

93.706

0.521
  pilD Vibrio campbellii strain DS40M4

53.16

94.056

0.5
  pilD Neisseria gonorrhoeae MS11

46.886

95.455

0.448

Multiple sequence alignment