Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACM530_RS05680 Genome accession   NZ_CP181333
Coordinates   1198584..1199792 (+) Length   402 a.a.
NCBI ID   WP_416364405.1    Uniprot ID   -
Organism   Pseudomonas sp. NFX183     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1193584..1204792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM530_RS05655 (ACM530_05655) - 1194059..1196215 (-) 2157 Protein_1114 DUF1631 domain-containing protein -
  ACM530_RS05660 (ACM530_05660) nadC 1196461..1197309 (+) 849 WP_145165288.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACM530_RS05665 (ACM530_05665) - 1197353..1197658 (-) 306 WP_106578609.1 DUF6388 family protein -
  ACM530_RS05675 (ACM530_05675) - 1197968..1198381 (-) 414 WP_262210148.1 pilin -
  ACM530_RS05680 (ACM530_05680) pilC 1198584..1199792 (+) 1209 WP_416364405.1 type II secretion system F family protein Machinery gene
  ACM530_RS05685 (ACM530_05685) pilD 1199789..1200655 (+) 867 WP_416364406.1 prepilin peptidase Machinery gene
  ACM530_RS05690 (ACM530_05690) coaE 1200652..1201275 (+) 624 WP_262210097.1 dephospho-CoA kinase -
  ACM530_RS05695 (ACM530_05695) yacG 1201272..1201472 (+) 201 WP_106578604.1 DNA gyrase inhibitor YacG -
  ACM530_RS05700 (ACM530_05700) - 1201469..1201684 (-) 216 WP_003171680.1 hypothetical protein -
  ACM530_RS05705 (ACM530_05705) - 1201751..1202440 (-) 690 WP_416364407.1 energy-coupling factor ABC transporter permease -
  ACM530_RS05710 (ACM530_05710) - 1202437..1202904 (-) 468 WP_242194782.1 FAD/FMN-containing dehydrogenase -
  ACM530_RS05715 (ACM530_05715) - 1203005..1203634 (+) 630 WP_145165302.1 DUF1780 domain-containing protein -
  ACM530_RS05720 (ACM530_05720) - 1203724..1203897 (+) 174 WP_064450648.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43750.53 Da        Isoelectric Point: 10.1742

>NTDB_id=1099774 ACM530_RS05680 WP_416364405.1 1198584..1199792(+) (pilC) [Pseudomonas sp. NFX183]
MNDAATIYAWEGINRKGRRVCGQTTGQNLALIKAQLREQGICPGRIRKKTPRLPSFAPPIKPADIALFTRQLATLLKAGI
PLLQAFDIIGEGFDNRLMRELIKGLKQEIASGNNLATALKKQPRYFDDLYCHLIAAGEHAGALETLLERVAIHLEKSQQL
KARIKKAMTYPIAVIVVAGLVSTVLLIHVVPQFQNLFAGVDGKLPGFTLSVIALSEFLQRAWWMVALGLAATIIGLRHAY
RASPGFRRWLDLGLLNAPLAGTLLKKTAVARYARTLSTTFAAGVPLVQALDCVAGAVGNGLFKQAIEHMRHDVSTGMQLH
QSMANSRLFPSMAIQMTAIGEESGTLDRMLEKVANHYEADVQNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1099774 ACM530_RS05680 WP_416364405.1 1198584..1199792(+) (pilC) [Pseudomonas sp. NFX183]
ATGAATGACGCTGCAACGATCTACGCCTGGGAAGGCATCAACCGTAAAGGACGCAGAGTATGCGGGCAAACCACAGGCCA
GAACCTGGCGCTGATCAAGGCACAACTGCGTGAGCAAGGGATTTGCCCCGGCCGAATCCGCAAGAAAACCCCACGCCTGC
CAAGCTTCGCCCCGCCGATAAAACCCGCCGATATTGCCCTGTTCACCCGCCAGCTGGCGACATTACTGAAGGCTGGCATA
CCGCTGTTGCAAGCGTTCGACATTATTGGCGAAGGCTTCGACAACCGCCTGATGCGCGAGCTGATAAAGGGCTTGAAACA
GGAAATCGCTTCCGGCAACAACCTGGCGACAGCGCTGAAAAAACAACCGCGCTATTTCGATGACCTGTATTGCCACCTGA
TTGCCGCCGGCGAGCACGCCGGCGCCCTGGAAACGCTGCTGGAGCGCGTTGCCATCCATCTGGAGAAAAGCCAGCAGCTC
AAGGCGCGCATCAAGAAGGCCATGACCTACCCCATCGCCGTCATCGTGGTTGCAGGCCTGGTCAGCACGGTCTTGCTGAT
CCACGTGGTGCCGCAGTTCCAGAACCTGTTCGCCGGCGTCGATGGCAAACTGCCGGGCTTCACGCTGAGTGTCATTGCCT
TGTCCGAGTTCCTGCAGCGTGCCTGGTGGATGGTGGCACTGGGTTTGGCCGCGACAATTATCGGGCTGCGCCACGCCTAT
CGGGCATCTCCCGGTTTTCGCCGTTGGCTGGACCTCGGTTTGTTGAACGCGCCCCTGGCAGGCACACTGCTGAAAAAAAC
CGCGGTTGCCCGCTACGCCCGCACACTCTCAACGACCTTCGCCGCGGGCGTGCCGTTGGTGCAGGCGCTGGATTGCGTGG
CGGGGGCGGTCGGAAATGGGTTGTTCAAACAGGCGATCGAACATATGCGTCACGATGTATCCACTGGCATGCAGTTGCAC
CAATCCATGGCCAACAGCCGCCTGTTTCCCAGTATGGCAATCCAGATGACGGCCATCGGGGAAGAATCGGGAACCCTGGA
TCGCATGCTGGAAAAAGTCGCCAATCACTACGAGGCCGATGTGCAAAACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CCCTGATCATGGTGGTATTGGGCGGCATCGTCGGCGCACTGGTGATTGCCATGTACCTGCCAGTGTTCCAGCTGGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.481

98.259

0.575
  pilC Acinetobacter baylyi ADP1

51.768

98.507

0.51
  pilC Acinetobacter baumannii D1279779

50.633

98.259

0.498
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilG Neisseria gonorrhoeae MS11

41.361

95.025

0.393
  pilG Neisseria meningitidis 44/76-A

40.576

95.025

0.386
  pilC Vibrio cholerae strain A1552

38.636

98.507

0.381
  pilC Thermus thermophilus HB27

37.406

99.751

0.373
  pilC Vibrio campbellii strain DS40M4

37.056

98.01

0.363

Multiple sequence alignment