Detailed information NTG1099775

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACM530_RS05685
• Genome accession: NZ_CP181333
• Coordinates: 1199789..1200655 (+)
• Length: 288 a.a.
• NCBI ID: WP_416364406.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NFX183
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1194789..1205655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM530_RS05660 (ACM530_05660)	nadC	1196461..1197309 (+)	849	WP_145165288.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACM530_RS05665 (ACM530_05665)	-	1197353..1197658 (-)	306	WP_106578609.1	DUF6388 family protein	-
ACM530_RS05675 (ACM530_05675)	-	1197968..1198381 (-)	414	WP_262210148.1	pilin	-
ACM530_RS05680 (ACM530_05680)	pilC	1198584..1199792 (+)	1209	WP_416364405.1	type II secretion system F family protein	Machinery gene
ACM530_RS05685 (ACM530_05685)	pilD	1199789..1200655 (+)	867	WP_416364406.1	prepilin peptidase	Machinery gene
ACM530_RS05690 (ACM530_05690)	coaE	1200652..1201275 (+)	624	WP_262210097.1	dephospho-CoA kinase	-
ACM530_RS05695 (ACM530_05695)	yacG	1201272..1201472 (+)	201	WP_106578604.1	DNA gyrase inhibitor YacG	-
ACM530_RS05700 (ACM530_05700)	-	1201469..1201684 (-)	216	WP_003171680.1	hypothetical protein	-
ACM530_RS05705 (ACM530_05705)	-	1201751..1202440 (-)	690	WP_416364407.1	energy-coupling factor ABC transporter permease	-
ACM530_RS05710 (ACM530_05710)	-	1202437..1202904 (-)	468	WP_242194782.1	FAD/FMN-containing dehydrogenase	-
ACM530_RS05715 (ACM530_05715)	-	1203005..1203634 (+)	630	WP_145165302.1	DUF1780 domain-containing protein	-
ACM530_RS05720 (ACM530_05720)	-	1203724..1203897 (+)	174	WP_064450648.1	DUF3094 family protein	-
ACM530_RS05725 (ACM530_05725)	-	1203958..1205256 (+)	1299	WP_145165303.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31591.86 Da
• Isoelectric Point: 8.2438

>NTDB_id=1099775 ACM530_RS05685 WP_416364406.1 1199789..1200655(+) (pilD) [Pseudomonas sp. NFX183]
MNPLLNEQPWLFVGMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAQEVLGLPADPAGPAYNLMRPHSCCPRCNHPIRAG
ENIPLLSYLLLKGRCAHCREPISARYPFTELAGALVSAAVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNSVGLLVTLPDALWGAVIGYMSLWTVFWLFKVITGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLLGVL
AGLILLRLRKPQASAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=1099775 ACM530_RS05685 WP_416364406.1 1199789..1200655(+) (pilD) [Pseudomonas sp. NFX183]
TTGAACCCGTTGCTGAATGAACAACCGTGGCTCTTTGTCGGGATGGCGCTGGTGCTGGGCCTGATTGTCGGCAGTTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCGCCCAGGCCCAGGAGGTGCTCGGTTTGCCTG
CTGACCCTGCGGGCCCGGCTTACAACCTGATGCGCCCCCATTCCTGCTGCCCCCGGTGCAATCATCCGATTCGCGCGGGG
GAAAATATTCCGCTGCTCAGCTACCTGCTGCTCAAGGGCCGTTGTGCCCATTGCCGAGAACCTATCAGTGCCCGCTACCC
GTTCACCGAACTTGCCGGCGCGCTGGTCTCGGCGGCGGTGGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGCTGAGCTGGGGGTTGCTGGCGATGAGCCTGATCGATGTGGATCATCAGCTGCTGCCCGACGTTCTGGTGCTGCCG
CTGTTATGGCTGGGGCTGATCCTCAACAGTGTTGGCTTGCTGGTGACGCTGCCGGATGCGCTCTGGGGTGCGGTCATTGG
GTATATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGGTGATCACCGGCAAGGACGGCATGGGCTATGGCGACTTCAAGT
TGTTGGCCTTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGATGACACTGCTGATGTCTTCGTTGCTCGGGGTGCTT
GCCGGGCTCATCCTGCTGCGCTTGCGCAAGCCCCAGGCGTCGGCCCCAATGCCGTTTGGTCCGTGTCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.676	96.528	0.528
pilD	Vibrio campbellii strain DS40M4	50.352	98.611	0.497
pilD	Acinetobacter nosocomialis M2	49.635	95.139	0.472
pilD	Acinetobacter baumannii D1279779	49.635	95.139	0.472
pilD	Neisseria gonorrhoeae MS11	49.612	89.583	0.444