Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ACM67B_RS02080 Genome accession   NZ_CP181247
Coordinates   420635..421876 (+) Length   413 a.a.
NCBI ID   WP_416190494.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415635..426876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS02060 (ACM67B_02060) groL 415905..417539 (+) 1635 WP_416189946.1 chaperonin GroEL -
  ACM67B_RS02065 (ACM67B_02065) - 417666..418232 (-) 567 WP_416189947.1 hypothetical protein -
  ACM67B_RS02075 (ACM67B_02075) pilF 418891..420567 (+) 1677 WP_416189948.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM67B_RS02080 (ACM67B_02080) pilG 420635..421876 (+) 1242 WP_416190494.1 type II secretion system F family protein Machinery gene
  ACM67B_RS02085 (ACM67B_02085) pilD 421878..422732 (+) 855 WP_416189949.1 prepilin peptidase Machinery gene
  ACM67B_RS02090 (ACM67B_02090) coaE 422742..423350 (+) 609 WP_416189950.1 dephospho-CoA kinase -
  ACM67B_RS02095 (ACM67B_02095) yacG 423353..423538 (+) 186 WP_095501899.1 DNA gyrase inhibitor YacG -
  ACM67B_RS02100 (ACM67B_02100) ispH 423620..424588 (-) 969 WP_416189951.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACM67B_RS02105 (ACM67B_02105) lspA 424613..425113 (-) 501 WP_416189952.1 signal peptidase II -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 46005.43 Da        Isoelectric Point: 9.8291

>NTDB_id=1099562 ACM67B_RS02080 WP_416190494.1 420635..421876(+) (pilG) [Neisseria sp. CCUG17229]
MARSKPKRSGIIRQNKGKHFTFEGQNIYIEQLVRGEVVAKDEAEARKKLQRRGIRPLRISKVKAVRKRRITQEDITVFTR
QLATMMKAGLPLIQAFEIVARAHSNPAMTQMLMQVRAEVEQGRALGESFAQYPKYFDRFYCNLVAAGEVGGVLDNLLDKL
AVYKEKTQAIKKKVKTALIYPISIIVVAVMLMFVMMMFVLPAFKDVYSGMGTELPWLTQMVMNVSDLFVEYGWIMMIGLM
LIGLVIYKRYQNSPSWQKRGDTVLLKLPVFGRIVQKAILARWARTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIC
AKVTQGLSLTSGMQATDLFPNMVIQMTAVGEESGSLDDMLNKVAEIYEDEVDNAVAQLSSLMEPIIMVVLGSLIGVLLVA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1099562 ACM67B_RS02080 WP_416190494.1 420635..421876(+) (pilG) [Neisseria sp. CCUG17229]
ATGGCTCGATCGAAACCCAAAAGGAGCGGGATCATCCGACAAAATAAAGGTAAACATTTTACATTTGAAGGTCAAAATAT
CTATATTGAACAGCTGGTGCGCGGTGAGGTGGTGGCGAAGGATGAGGCAGAGGCGCGTAAAAAGCTTCAGCGCCGCGGCA
TCCGTCCGTTGCGTATCAGTAAGGTGAAGGCAGTACGCAAGCGCCGCATCACGCAAGAAGACATCACGGTATTTACCCGC
CAGTTGGCAACCATGATGAAAGCAGGCCTGCCTTTGATACAGGCGTTTGAAATTGTGGCGCGCGCGCATTCGAATCCTGC
GATGACACAAATGCTTATGCAGGTCCGGGCTGAAGTAGAGCAGGGGCGTGCATTGGGTGAGTCTTTCGCCCAATACCCGA
AATATTTTGATCGGTTCTACTGTAATTTGGTTGCTGCCGGCGAGGTTGGTGGCGTGTTGGATAACTTGCTGGATAAATTG
GCGGTTTATAAAGAAAAAACACAAGCCATTAAGAAAAAAGTGAAAACGGCACTGATTTATCCAATTTCGATTATCGTAGT
TGCCGTAATGTTGATGTTTGTCATGATGATGTTTGTGTTACCAGCGTTTAAAGATGTATATAGCGGCATGGGGACCGAGC
TGCCTTGGCTGACTCAAATGGTGATGAATGTTTCCGATTTATTTGTCGAGTATGGCTGGATAATGATGATTGGCTTGATG
CTAATTGGTTTGGTTATATATAAGCGGTATCAAAATTCACCTTCTTGGCAAAAACGTGGCGATACGGTATTGCTGAAACT
ACCCGTTTTCGGGCGAATTGTACAGAAGGCGATTCTTGCACGGTGGGCTCGAACCACGTCTACTTTGTTTGCTGCAGGGG
TGCCGTTGGTGGAAGTGTTGGATTCGGTGGCAGGTGCGTCAGGCAATATCCTGTATGAAGAGGCTACGCAAGACATTTGT
GCCAAAGTGACGCAAGGTTTGTCGCTGACTTCCGGCATGCAGGCTACAGATCTGTTTCCGAATATGGTGATTCAGATGAC
TGCAGTGGGTGAAGAATCAGGTTCTTTAGATGATATGTTGAACAAAGTGGCAGAGATTTATGAGGATGAAGTGGATAATG
CTGTTGCGCAATTATCTTCGTTGATGGAGCCGATTATCATGGTAGTATTGGGATCATTGATCGGTGTGTTGCTGGTAGCG
ATGTATTTGCCGCTGTTCAACTTGGGCAACGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

67.75

96.852

0.656
  pilG Neisseria meningitidis 44/76-A

67

96.852

0.649
  pilC Legionella pneumophila strain ERS1305867

46.437

98.547

0.458
  pilC Pseudomonas stutzeri DSM 10701

44.14

97.094

0.429
  pilC Acinetobacter baylyi ADP1

44.25

96.852

0.429
  pilC Acinetobacter baumannii D1279779

45.974

93.22

0.429
  pilC Vibrio cholerae strain A1552

38

96.852

0.368
  pilC Vibrio campbellii strain DS40M4

37.562

97.337

0.366

Multiple sequence alignment