Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACM26W_RS11210 Genome accession   NZ_CP181044
Coordinates   2328089..2329321 (+) Length   410 a.a.
NCBI ID   WP_416137081.1    Uniprot ID   -
Organism   Halomonas sp. HK25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2323089..2334321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM26W_RS11165 (ACM26W_11165) - 2323293..2323658 (-) 366 WP_416137075.1 helix-turn-helix domain-containing protein -
  ACM26W_RS11170 (ACM26W_11170) - 2323663..2323995 (-) 333 WP_416137076.1 type II toxin-antitoxin system HigB family toxin -
  ACM26W_RS11175 (ACM26W_11175) - 2324177..2324416 (+) 240 WP_416137077.1 antitoxin MazE family protein -
  ACM26W_RS11180 (ACM26W_11180) - 2324413..2324736 (+) 324 WP_416137078.1 type II toxin-antitoxin system PemK/MazF family toxin -
  ACM26W_RS11185 (ACM26W_11185) - 2324765..2325028 (-) 264 WP_416140865.1 DUF2442 domain-containing protein -
  ACM26W_RS11190 (ACM26W_11190) - 2325009..2325122 (-) 114 WP_416140866.1 DUF4160 domain-containing protein -
  ACM26W_RS11195 (ACM26W_11195) - 2325173..2325256 (-) 84 Protein_2193 DUF4160 domain-containing protein -
  ACM26W_RS11200 (ACM26W_11200) - 2325429..2325881 (-) 453 WP_416137079.1 pilin -
  ACM26W_RS11205 (ACM26W_11205) pilB 2326256..2328052 (+) 1797 WP_416137080.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM26W_RS11210 (ACM26W_11210) pilC 2328089..2329321 (+) 1233 WP_416137081.1 type II secretion system F family protein Machinery gene
  ACM26W_RS11215 (ACM26W_11215) pilD 2329430..2330281 (+) 852 WP_416137082.1 prepilin peptidase Machinery gene
  ACM26W_RS11220 (ACM26W_11220) - 2332877..2333455 (-) 579 WP_416137083.1 hypoxanthine-guanine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44980.72 Da        Isoelectric Point: 9.9824

>NTDB_id=1097888 ACM26W_RS11210 WP_416137081.1 2328089..2329321(+) (pilC) [Halomonas sp. HK25]
MATRTRRVPKEIKLYRWNWTGKGPGGRKVGGEIIAAQKGEVERILNGQNIIIKNVRRKSGLGGGMGKIKPRDIMLFARQM
ATMIRAGVPVLQAFQVVAESLKKPAMSALVQELMNDVAAGSSFSDALKRHPQHFDRLFANLVEAGEQSGSLDKMLDRVAT
YKEKIELLKGRVKKALWYPAAVIAVGIGVTALLLIKVVPQFESLFQGFGAELPAMTRMTIAMSEFAQAYWWWFVGGVVAF
IYFIRTGMKKSESFAYRMHAFALKVPVLGEILDKSSVARYSRTLATTFGAGVPLVEALDTAAGATGNKVYERAVAQVRED
VATGQQLNFAMRMTEQFPALAVQMVGIGEESGSLDAMLNRVADYYEEEVDNMVDTLTSLLEPFIIVVLGVLVGGLVISMY
LPIFELGSVI

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1097888 ACM26W_RS11210 WP_416137081.1 2328089..2329321(+) (pilC) [Halomonas sp. HK25]
ATGGCGACACGGACTAGACGGGTACCGAAGGAGATCAAGCTCTACCGCTGGAACTGGACCGGCAAGGGCCCGGGGGGGCG
CAAGGTAGGGGGCGAGATCATCGCCGCCCAGAAGGGCGAGGTGGAGCGGATCCTCAACGGCCAGAACATCATCATCAAGA
ACGTGCGCCGCAAGAGCGGCCTGGGCGGCGGCATGGGCAAGATCAAGCCCCGCGACATCATGCTGTTCGCCCGCCAGATG
GCGACCATGATCCGCGCCGGCGTGCCGGTGCTGCAGGCCTTCCAGGTGGTGGCGGAGAGCCTCAAGAAGCCCGCCATGAG
CGCCCTGGTCCAGGAGCTGATGAACGACGTGGCCGCCGGCTCCTCGTTCTCCGATGCCTTGAAGCGCCACCCCCAGCACT
TCGATCGGCTGTTCGCCAACCTGGTGGAGGCCGGCGAGCAGTCCGGCTCGCTGGACAAGATGCTCGACCGGGTGGCCACC
TACAAGGAGAAGATCGAGCTGCTCAAGGGGCGCGTGAAGAAGGCGCTGTGGTACCCCGCGGCGGTGATCGCGGTGGGCAT
CGGCGTCACCGCCCTGCTGCTGATCAAGGTGGTGCCCCAGTTCGAGAGCCTGTTCCAGGGCTTCGGCGCGGAGCTGCCGG
CCATGACCCGCATGACCATCGCCATGTCCGAGTTCGCCCAGGCCTACTGGTGGTGGTTCGTCGGCGGCGTGGTGGCCTTC
ATCTACTTCATCCGCACCGGCATGAAGAAGTCCGAGAGCTTCGCCTACCGCATGCACGCCTTCGCCCTCAAGGTGCCGGT
GCTGGGCGAGATCCTGGATAAATCGTCCGTGGCGCGCTACTCGCGAACCCTGGCCACCACCTTCGGCGCCGGCGTGCCGC
TGGTGGAGGCGCTGGACACCGCCGCCGGCGCCACCGGCAACAAGGTCTACGAGCGCGCGGTGGCGCAGGTCCGCGAGGAC
GTGGCCACCGGCCAGCAGCTCAACTTCGCCATGCGCATGACCGAGCAGTTCCCGGCGCTGGCGGTGCAGATGGTGGGCAT
CGGCGAGGAGTCGGGCTCGCTCGACGCCATGCTCAACCGAGTGGCGGACTACTACGAGGAGGAGGTCGACAACATGGTCG
ACACCCTCACCTCGCTGCTGGAGCCCTTCATCATCGTGGTGCTCGGGGTGCTGGTGGGTGGCCTGGTCATCTCCATGTAC
CTGCCGATCTTCGAGTTGGGTAGTGTGATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.975

98.049

0.539
  pilC Acinetobacter baumannii D1279779

52.897

96.829

0.512
  pilC Acinetobacter baylyi ADP1

52.393

96.829

0.507
  pilC Legionella pneumophila strain ERS1305867

50.877

97.317

0.495
  pilC Vibrio campbellii strain DS40M4

43.659

100

0.437
  pilC Vibrio cholerae strain A1552

43.35

99.024

0.429
  pilG Neisseria gonorrhoeae MS11

42.424

96.585

0.41
  pilG Neisseria meningitidis 44/76-A

42.424

96.585

0.41

Multiple sequence alignment