Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | ACL43R_RS01450 | Genome accession | NZ_CP180647 |
| Coordinates | 290773..291162 (+) | Length | 129 a.a. |
| NCBI ID | WP_270264536.1 | Uniprot ID | - |
| Organism | Lactococcus formosensis strain JAL11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 290773..294666 | 290773..291162 | within | 0 |
Gene organization within MGE regions
Location: 290773..294666
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACL43R_RS01450 (ACL43R_01450) | ssbB | 290773..291162 (+) | 390 | WP_270264536.1 | single-stranded DNA-binding protein | Machinery gene |
| ACL43R_RS01455 (ACL43R_01455) | - | 291220..291750 (+) | 531 | WP_270264534.1 | ClbS/DfsB family four-helix bundle protein | - |
| ACL43R_RS01460 (ACL43R_01460) | groES | 291867..292148 (+) | 282 | WP_096368715.1 | co-chaperone GroES | - |
| ACL43R_RS01465 (ACL43R_01465) | groL | 292178..293803 (+) | 1626 | WP_003133890.1 | chaperonin GroEL | - |
| ACL43R_RS01470 (ACL43R_01470) | - | 293854..294666 (-) | 813 | WP_017369447.1 | MBL fold metallo-hydrolase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14834.02 Da Isoelectric Point: 8.0101
>NTDB_id=1097137 ACL43R_RS01450 WP_270264536.1 290773..291162(+) (ssbB) [Lactococcus formosensis strain JAL11]
MNKMLLVGRLVADPELNKTSSGKSLLRINLAVKRRYKNASGEKDTDFISLVFWEKLAEHCTSYAKKGALLAVEGEIRTRS
YVDKHEQKRYVTEILVKNFDLLESRATIAMRQDSIENNDIDLKEDELPF
MNKMLLVGRLVADPELNKTSSGKSLLRINLAVKRRYKNASGEKDTDFISLVFWEKLAEHCTSYAKKGALLAVEGEIRTRS
YVDKHEQKRYVTEILVKNFDLLESRATIAMRQDSIENNDIDLKEDELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=1097137 ACL43R_RS01450 WP_270264536.1 290773..291162(+) (ssbB) [Lactococcus formosensis strain JAL11]
ATGAATAAAATGTTACTTGTTGGTCGACTCGTTGCGGACCCAGAGCTCAATAAAACATCCAGTGGAAAAAGTCTCTTGAG
GATAAATCTTGCTGTCAAAAGACGTTATAAAAATGCTTCCGGGGAAAAAGATACAGACTTTATCTCTTTGGTCTTTTGGG
AGAAGCTAGCGGAACACTGTACATCGTATGCTAAAAAAGGAGCCTTACTTGCCGTGGAAGGGGAGATACGTACCAGAAGT
TATGTAGATAAACATGAACAAAAACGTTATGTGACAGAGATACTGGTGAAAAATTTTGATCTTTTAGAGAGTCGTGCAAC
CATCGCCATGCGACAAGATTCTATAGAAAACAATGACATTGACTTAAAAGAGGACGAATTACCATTTTAA
ATGAATAAAATGTTACTTGTTGGTCGACTCGTTGCGGACCCAGAGCTCAATAAAACATCCAGTGGAAAAAGTCTCTTGAG
GATAAATCTTGCTGTCAAAAGACGTTATAAAAATGCTTCCGGGGAAAAAGATACAGACTTTATCTCTTTGGTCTTTTGGG
AGAAGCTAGCGGAACACTGTACATCGTATGCTAAAAAAGGAGCCTTACTTGCCGTGGAAGGGGAGATACGTACCAGAAGT
TATGTAGATAAACATGAACAAAAACGTTATGTGACAGAGATACTGGTGAAAAATTTTGATCTTTTAGAGAGTCGTGCAAC
CATCGCCATGCGACAAGATTCTATAGAAAACAATGACATTGACTTAAAAGAGGACGAATTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
56.589 |
100 |
0.566 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.077 |
100 |
0.535 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
50.769 |
100 |
0.512 |
| ssbA | Streptococcus mutans UA159 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50 |
100 |
0.504 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50 |
100 |
0.504 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50 |
100 |
0.504 |
| ssbB/cilA | Streptococcus mitis SK321 |
50 |
100 |
0.504 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.536 |
86.822 |
0.395 |