Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABXH21_RS09830 Genome accession   NZ_AP031472
Coordinates   2193134..2194357 (-) Length   407 a.a.
NCBI ID   WP_353551315.1    Uniprot ID   -
Organism   Moraxella osloensis strain NBRC 115781     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2188134..2199357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH21_RS09810 (SKB0120_19200) - 2188963..2190066 (+) 1104 WP_353478998.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  ABXH21_RS09815 (SKB0120_19210) - 2190136..2191542 (+) 1407 WP_065253798.1 nicotinate phosphoribosyltransferase -
  ABXH21_RS09820 (SKB0120_19220) coaE 2191600..2192256 (-) 657 WP_353551313.1 dephospho-CoA kinase -
  ABXH21_RS09825 (SKB0120_19230) pilD 2192253..2193128 (-) 876 WP_353551314.1 A24 family peptidase Machinery gene
  ABXH21_RS09830 (SKB0120_19240) pilC 2193134..2194357 (-) 1224 WP_353551315.1 type II secretion system F family protein Machinery gene
  ABXH21_RS09835 (SKB0120_19250) pilB 2194414..2196120 (-) 1707 WP_353551317.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABXH21_RS09840 (SKB0120_19260) tpiA 2196543..2197382 (+) 840 WP_353551319.1 triose-phosphate isomerase -
  ABXH21_RS09845 (SKB0120_19270) secG 2197473..2197793 (+) 321 WP_353551321.1 preprotein translocase subunit SecG -
  ABXH21_RS09860 (SKB0120_19280) rimP 2198344..2198853 (+) 510 WP_353551323.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44869.85 Da        Isoelectric Point: 9.7054

>NTDB_id=109708 ABXH21_RS09830 WP_353551315.1 2193134..2194357(-) (pilC) [Moraxella osloensis strain NBRC 115781]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIQVKTIKKKPKPIFQMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFNSFGAELPAFTRMVVNMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVIARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=109708 ABXH21_RS09830 WP_353551315.1 2193134..2194357(-) (pilC) [Moraxella osloensis strain NBRC 115781]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAAAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAAGCGCAACTACGCAAGCAAGGCATCCAAGTCAAGACGATTAAGAAAAAAC
CCAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGGCAATCGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCGGGTGTCCCCCTTACTCAGTCGTTTGAAATCGTTGCAGATGCGCTTGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCGGGGAGCACCTTTGCTGCAGCGCTGCGCAAACATCCCAGATATTTTGATGACCTGT
TTTGTTCATTAGTAGAGGCAGGTGAGCAGTCGGGCGCGCTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATTGTGGTTGCGATTATCGTTACCAT
TATTTTGCTGGTCAAAGTAGTACCGGTGTTTGCTGATTTATTCAATTCATTTGGCGCAGAGTTACCCGCATTTACCCGAA
TGGTAGTCAATATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTGGTTGGCTTT
TCTGAAGCTAAAAAACGCAGCAAGCCCTTTAATGATTTTTTAGACCGACTTACCTTAAAATTACCAATCTTTGGCAATAT
TGCTTATCAAGCGGTGATTGCGCGTTTTTCCCGCACTTTATCTACCACTTTTGCAGCAGGTGTGCCGCTGATTGATGCTT
TAGATTCAACTGCTGGGGCAACCAATAATGTGGTATTTTATAATGCCACGCAAAAAATTAAAGGCGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACCAATCTTTTTCCCAGTATGGCTATCCAAATGGTCGGTATTGGTGAAGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAATGAAGTAGACAACGCCGTAGATGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCGGTTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.588

100

0.708
  pilC Acinetobacter baylyi ADP1

69.118

100

0.693
  pilC Pseudomonas stutzeri DSM 10701

64.304

97.052

0.624
  pilC Legionella pneumophila strain ERS1305867

56.14

98.034

0.55
  pilC Vibrio cholerae strain A1552

43.627

100

0.437
  pilG Neisseria gonorrhoeae MS11

44.361

98.034

0.435
  pilG Neisseria meningitidis 44/76-A

44.11

98.034

0.432
  pilC Vibrio campbellii strain DS40M4

41.5

98.28

0.408

Multiple sequence alignment