Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYR_RS03555 Genome accession   NZ_CP180556
Coordinates   792833..794053 (-) Length   406 a.a.
NCBI ID   WP_415902931.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD29_5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 787833..799053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYR_RS03530 (ACMXYR_03530) argJ 788982..790202 (+) 1221 WP_415902926.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYR_RS03535 (ACMXYR_03535) - 790202..791161 (+) 960 WP_415902927.1 Nudix family hydrolase -
  ACMXYR_RS03540 (ACMXYR_03540) yacG 791139..791366 (-) 228 WP_415902928.1 DNA gyrase inhibitor YacG -
  ACMXYR_RS03545 (ACMXYR_03545) coaE 791366..791968 (-) 603 WP_415902929.1 dephospho-CoA kinase -
  ACMXYR_RS03550 (ACMXYR_03550) pilD 791972..792820 (-) 849 WP_415902930.1 prepilin peptidase Machinery gene
  ACMXYR_RS03555 (ACMXYR_03555) pilC 792833..794053 (-) 1221 WP_415902931.1 type II secretion system F family protein Machinery gene
  ACMXYR_RS03560 (ACMXYR_03560) pilB 794070..795785 (-) 1716 WP_415902932.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYR_RS03565 (ACMXYR_03565) - 796036..796551 (+) 516 WP_415902933.1 pilin -
  ACMXYR_RS03570 (ACMXYR_03570) - 796733..797074 (+) 342 WP_415897625.1 hypothetical protein -
  ACMXYR_RS03575 (ACMXYR_03575) nadC 797159..798004 (-) 846 WP_415902934.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMXYR_RS03580 (ACMXYR_03580) ampD 798106..798651 (+) 546 WP_415902935.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44061.33 Da        Isoelectric Point: 9.6242

>NTDB_id=1096556 ACMXYR_RS03555 WP_415902931.1 792833..794053(-) (pilC) [Neptuniibacter sp. QD29_5]
MAKNANIYTFTWQGKDKSGNKSKGKIDASSITSAKAQLRKQGILTSKISKEHSAGLFSAKNKPVKPVDIAFFTRQMATMM
RSGVPLLQGLEITAGGIEKQKLKDIVYEIKNDVNSGTDFSTSLTKHPQHFDDLYCNLVNAGEQSGALDAMLDRIATYKEK
LESLKAKIKKALTYPTAVIIVGIIVSAILLVKVVPQFEDVFKSFGAELPAFTQFVINLSEIAQEWWWIVLIATALFGFAF
QKARQKSAKFRDSVDKAILKMPVIGQILHNASIARFARTLSTTFAAGVPLVNALDSAAGASGNALYRDAILQIKNGVSTG
QSLQNAVTMTGVFPNMTIQMIAIGEEAGSLEMMLEKVADFYEEQVDNAVDNLSSLLEPLIMAVLGVLVGGLVVAMYLPIF
QLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1096556 ACMXYR_RS03555 WP_415902931.1 792833..794053(-) (pilC) [Neptuniibacter sp. QD29_5]
ATGGCTAAGAATGCCAACATATACACTTTTACCTGGCAAGGGAAAGATAAAAGCGGTAATAAAAGCAAAGGCAAAATTGA
TGCAAGCAGTATAACTTCTGCCAAAGCACAACTGCGCAAGCAAGGAATCTTAACATCCAAAATATCCAAGGAACATTCTG
CGGGTTTATTTAGTGCGAAAAACAAACCTGTAAAACCTGTCGATATTGCATTTTTTACTCGCCAAATGGCAACCATGATG
CGTTCTGGGGTTCCACTACTTCAAGGACTAGAGATAACTGCTGGCGGCATAGAGAAACAAAAGTTAAAAGATATCGTTTA
TGAAATTAAAAATGATGTTAATAGCGGTACCGATTTTTCTACCTCTTTAACCAAACATCCTCAGCACTTTGATGACCTGT
ACTGCAACTTAGTTAACGCTGGTGAACAATCAGGTGCACTCGACGCAATGCTCGATCGTATTGCGACCTACAAGGAAAAG
CTGGAATCCCTTAAAGCTAAAATCAAAAAAGCCCTAACCTACCCTACGGCAGTAATCATAGTAGGTATAATCGTTTCGGC
GATCCTACTCGTTAAGGTAGTTCCTCAGTTTGAAGACGTATTTAAGAGCTTTGGGGCTGAACTTCCCGCTTTCACACAGT
TTGTTATAAACCTTTCTGAAATCGCCCAAGAATGGTGGTGGATAGTTTTAATCGCTACAGCTCTATTTGGTTTCGCGTTC
CAAAAAGCTAGGCAAAAATCAGCTAAGTTTAGAGACAGTGTTGATAAAGCTATTCTGAAAATGCCTGTAATAGGGCAAAT
TCTTCATAACGCCTCTATCGCACGATTTGCTCGAACATTATCGACTACATTTGCTGCCGGTGTCCCTTTAGTCAATGCTT
TAGATTCCGCAGCTGGCGCATCAGGCAATGCCCTTTACCGTGATGCAATCCTACAAATTAAGAACGGTGTATCAACGGGC
CAATCCTTACAAAATGCGGTCACAATGACTGGTGTTTTTCCAAACATGACTATCCAGATGATCGCCATAGGTGAGGAAGC
CGGTTCACTTGAAATGATGTTGGAAAAGGTAGCGGACTTCTACGAAGAACAAGTCGATAATGCTGTTGATAATTTATCCA
GCCTTTTAGAGCCACTTATTATGGCTGTGCTTGGCGTTCTCGTTGGCGGACTTGTTGTTGCCATGTATCTTCCAATCTTC
CAGCTTGGCCAAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.446

97.783

0.581
  pilC Legionella pneumophila strain ERS1305867

56.02

100

0.562
  pilC Acinetobacter baumannii D1279779

55.025

98.03

0.539
  pilC Acinetobacter baylyi ADP1

53.518

98.03

0.525
  pilC Vibrio cholerae strain A1552

43.325

97.783

0.424
  pilG Neisseria meningitidis 44/76-A

42.714

98.03

0.419
  pilG Neisseria gonorrhoeae MS11

42.462

98.03

0.416
  pilC Vibrio campbellii strain DS40M4

41.562

97.783

0.406
  pilC Thermus thermophilus HB27

36.842

98.276

0.362

Multiple sequence alignment