Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYW_RS03610 Genome accession   NZ_CP180555
Coordinates   813448..814668 (-) Length   406 a.a.
NCBI ID   WP_415905245.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD48_55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 808448..819668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYW_RS03585 (ACMXYW_03585) argJ 809440..810660 (+) 1221 WP_415905240.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYW_RS03590 (ACMXYW_03590) - 810660..811619 (+) 960 WP_415905241.1 Nudix family hydrolase -
  ACMXYW_RS03595 (ACMXYW_03595) yacG 811597..811824 (-) 228 WP_415905242.1 DNA gyrase inhibitor YacG -
  ACMXYW_RS03600 (ACMXYW_03600) coaE 811824..812426 (-) 603 WP_415905243.1 dephospho-CoA kinase -
  ACMXYW_RS03605 (ACMXYW_03605) pilD 812430..813278 (-) 849 WP_415905244.1 prepilin peptidase Machinery gene
  ACMXYW_RS03610 (ACMXYW_03610) pilC 813448..814668 (-) 1221 WP_415905245.1 type II secretion system F family protein Machinery gene
  ACMXYW_RS03615 (ACMXYW_03615) pilB 814685..816400 (-) 1716 WP_415905246.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYW_RS03620 (ACMXYW_03620) - 816649..817071 (+) 423 WP_415905247.1 pilin -
  ACMXYW_RS03625 (ACMXYW_03625) - 817143..817484 (+) 342 WP_415905248.1 hypothetical protein -
  ACMXYW_RS03630 (ACMXYW_03630) nadC 817569..818414 (-) 846 WP_415905249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMXYW_RS03635 (ACMXYW_03635) ampD 818516..819061 (+) 546 WP_415905250.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44020.36 Da        Isoelectric Point: 9.4798

>NTDB_id=1096533 ACMXYW_RS03610 WP_415905245.1 813448..814668(-) (pilC) [Neptuniibacter sp. QD48_55]
MAKNAKLYTFTWQGKDKSGNKSKGKIDASSAAQAKAQLRTQGILTSKISKEQSAGLFSAKNKPIKPVDIAFFTRQMATMM
RSGVPLLQGLEITAGGIEKQKLKDIVYEIKNDVNSGTDFSTSLTRHPEHFDDLYCNLVNAGEQSGALDAMLDRIATYKEK
LESLKAKIKKALTYPTAVIIVGLIVSAILLVKVVPQFEDVFKGFGADLPAFTKFVINLSEVAQEWWWISFLIVAAIGFSF
QKAKQKSQKFRDGTDKAMLKIPIIGEILHNASIARFARTLATTFAAGVPLVNALESAAGASGNALYRDAILQIKNGVSTG
QSLQNAVTMTGIFPNMVIQMIAIGEEAGSLEMMLEKIADFYEELVDNAVDNLSSLLEPLIMAVLGVLVGGLVIAMYLPIF
QLGNVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1096533 ACMXYW_RS03610 WP_415905245.1 813448..814668(-) (pilC) [Neptuniibacter sp. QD48_55]
ATGGCTAAAAATGCCAAGTTATATACTTTCACCTGGCAAGGGAAAGATAAAAGCGGTAATAAAAGCAAAGGCAAGATAGA
TGCAAGCAGCGCAGCTCAAGCTAAAGCACAACTTCGCACTCAAGGAATCTTAACTTCTAAAATATCCAAAGAGCAATCTG
CCGGCCTATTTAGCGCAAAAAACAAGCCTATAAAGCCTGTAGACATTGCTTTCTTTACCCGTCAAATGGCTACGATGATG
CGTTCGGGCGTTCCATTACTCCAAGGACTAGAAATTACTGCTGGAGGAATAGAAAAACAAAAACTAAAAGATATTGTTTA
TGAAATTAAAAATGACGTAAACAGCGGAACAGATTTCTCAACCTCATTGACTCGGCACCCTGAACATTTTGATGATTTGT
ACTGCAACTTAGTGAATGCTGGCGAACAATCGGGCGCATTAGATGCAATGCTAGATCGAATAGCAACTTATAAAGAAAAG
CTAGAATCACTTAAGGCAAAAATAAAGAAAGCATTAACTTACCCAACAGCTGTAATAATTGTCGGCCTAATTGTTTCAGC
TATCCTCCTTGTAAAAGTAGTACCTCAGTTTGAAGATGTTTTCAAAGGCTTTGGCGCAGACCTCCCAGCCTTTACTAAAT
TCGTTATTAATTTATCTGAAGTTGCACAAGAATGGTGGTGGATCTCTTTCCTTATTGTTGCTGCCATAGGCTTTTCATTC
CAAAAAGCAAAACAAAAATCTCAGAAATTTAGAGACGGAACTGACAAAGCGATGCTAAAAATACCCATTATTGGTGAAAT
ATTACACAATGCATCTATTGCCCGTTTCGCACGAACGCTTGCTACAACTTTTGCAGCAGGGGTTCCTTTAGTCAACGCTC
TAGAGTCTGCCGCAGGCGCTTCAGGTAACGCTCTATATAGGGATGCAATTTTACAAATTAAAAATGGCGTATCTACAGGG
CAATCCCTTCAAAATGCAGTAACCATGACAGGTATATTTCCCAATATGGTTATTCAGATGATTGCAATCGGGGAAGAAGC
CGGCTCACTTGAGATGATGTTAGAAAAGATTGCTGATTTTTATGAAGAACTAGTGGATAACGCTGTAGATAATTTATCTA
GCTTACTAGAACCTCTTATCATGGCTGTTCTTGGAGTTTTAGTTGGCGGACTCGTTATAGCCATGTATCTTCCGATATTC
CAATTAGGCAACGTTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.248

100

0.574
  pilC Legionella pneumophila strain ERS1305867

57.002

100

0.571
  pilC Acinetobacter baumannii D1279779

54.523

98.03

0.534
  pilC Acinetobacter baylyi ADP1

52.882

98.276

0.52
  pilC Vibrio campbellii strain DS40M4

42.893

98.768

0.424
  pilG Neisseria meningitidis 44/76-A

41.247

100

0.424
  pilC Vibrio cholerae strain A1552

42.786

99.015

0.424
  pilG Neisseria gonorrhoeae MS11

41.007

100

0.421

Multiple sequence alignment