Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACMXYW_RS03605 Genome accession   NZ_CP180555
Coordinates   812430..813278 (-) Length   282 a.a.
NCBI ID   WP_415905244.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD48_55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 807430..818278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYW_RS03585 (ACMXYW_03585) argJ 809440..810660 (+) 1221 WP_415905240.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYW_RS03590 (ACMXYW_03590) - 810660..811619 (+) 960 WP_415905241.1 Nudix family hydrolase -
  ACMXYW_RS03595 (ACMXYW_03595) yacG 811597..811824 (-) 228 WP_415905242.1 DNA gyrase inhibitor YacG -
  ACMXYW_RS03600 (ACMXYW_03600) coaE 811824..812426 (-) 603 WP_415905243.1 dephospho-CoA kinase -
  ACMXYW_RS03605 (ACMXYW_03605) pilD 812430..813278 (-) 849 WP_415905244.1 prepilin peptidase Machinery gene
  ACMXYW_RS03610 (ACMXYW_03610) pilC 813448..814668 (-) 1221 WP_415905245.1 type II secretion system F family protein Machinery gene
  ACMXYW_RS03615 (ACMXYW_03615) pilB 814685..816400 (-) 1716 WP_415905246.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYW_RS03620 (ACMXYW_03620) - 816649..817071 (+) 423 WP_415905247.1 pilin -
  ACMXYW_RS03625 (ACMXYW_03625) - 817143..817484 (+) 342 WP_415905248.1 hypothetical protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31714.73 Da        Isoelectric Point: 6.4711

>NTDB_id=1096532 ACMXYW_RS03605 WP_415905244.1 812430..813278(-) (pilD) [Neptuniibacter sp. QD48_55]
MIPIINDPALAIACAFLFSLCVGSFLNVVIHRLPIMMQREWEKEINGDSDIIQEPYNLSEPASTCPKCQHKIRWYENIPV
ISWIFLRAKCSSCGLHIPFRYPFVELFTAVCSAYAVYIYGFNLIGLSVVVLTWVLVCLIFIDIDHQLLPDRLTLPLLWLG
LLVNSFDLFSSLEHAVYGAMAGYLSLWSIYWVFKLLTGKEGMGYGDFKLLAALGAWTGIYQLPLIILLSSLVGAIIGIGM
MLFKNHSSQNPIPFGPYLAIAGWIALIWGDTLTTIYLQLIRI

Nucleotide


Download         Length: 849 bp        

>NTDB_id=1096532 ACMXYW_RS03605 WP_415905244.1 812430..813278(-) (pilD) [Neptuniibacter sp. QD48_55]
ATGATTCCAATTATTAATGACCCCGCGCTGGCTATCGCTTGCGCGTTTTTATTCTCCCTTTGTGTCGGTAGTTTTTTAAA
CGTAGTCATACATCGCTTACCCATTATGATGCAAAGAGAATGGGAAAAAGAAATTAATGGTGACTCTGATATAATCCAAG
AACCTTATAATCTCTCAGAACCTGCATCCACCTGTCCTAAGTGCCAGCACAAAATCCGCTGGTATGAAAACATACCTGTT
ATCAGCTGGATTTTCCTTCGCGCAAAATGCTCATCTTGTGGGCTTCATATCCCTTTTCGGTACCCTTTTGTAGAACTATT
TACAGCAGTTTGCTCTGCGTACGCTGTCTATATTTATGGTTTTAACCTTATTGGATTAAGCGTCGTAGTACTTACATGGG
TGCTAGTTTGCTTGATATTTATTGATATTGATCATCAACTTCTTCCCGACCGTTTAACTCTACCTTTGTTATGGCTAGGC
TTATTGGTTAATAGCTTTGATCTGTTCAGCTCACTAGAACATGCGGTATATGGTGCGATGGCAGGCTACCTCAGCTTATG
GTCAATCTACTGGGTCTTTAAACTACTAACCGGCAAAGAAGGCATGGGGTACGGTGATTTTAAACTACTCGCAGCCCTTG
GAGCCTGGACTGGAATATATCAATTACCACTTATCATCCTCTTAAGCTCCCTCGTCGGTGCAATCATTGGGATAGGCATG
ATGCTATTTAAAAATCATTCATCTCAAAACCCTATCCCTTTCGGCCCTTATCTCGCTATTGCTGGTTGGATAGCACTGAT
ATGGGGCGATACGCTAACGACAATTTACCTTCAACTTATAAGAATCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-117)

Type IV leader peptidase family (Peptidase_A24)

(130-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

55.914

98.936

0.553
  pilD Acinetobacter nosocomialis M2

55.556

98.936

0.55
  pilD Vibrio cholerae strain A1552

53.623

97.872

0.525
  pilD Vibrio campbellii strain DS40M4

50.538

98.936

0.5
  pilD Neisseria gonorrhoeae MS11

47.191

94.681

0.447

Multiple sequence alignment