Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYU_RS03665 Genome accession   NZ_CP180551
Coordinates   827228..828448 (-) Length   406 a.a.
NCBI ID   WP_415900242.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD48_11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 822228..833448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYU_RS03640 (ACMXYU_03640) argJ 823126..824346 (+) 1221 WP_415900235.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYU_RS03645 (ACMXYU_03645) - 824346..825305 (+) 960 WP_415900237.1 Nudix family hydrolase -
  ACMXYU_RS03650 (ACMXYU_03650) - 825283..825510 (-) 228 WP_415883654.1 DNA gyrase inhibitor YacG -
  ACMXYU_RS03655 (ACMXYU_03655) coaE 825535..826134 (-) 600 WP_415900238.1 dephospho-CoA kinase -
  ACMXYU_RS03660 (ACMXYU_03660) pilD 826138..827058 (-) 921 WP_415900240.1 prepilin peptidase Machinery gene
  ACMXYU_RS03665 (ACMXYU_03665) pilC 827228..828448 (-) 1221 WP_415900242.1 type II secretion system F family protein Machinery gene
  ACMXYU_RS03670 (ACMXYU_03670) pilB 828465..830180 (-) 1716 WP_415900244.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYU_RS03675 (ACMXYU_03675) - 830429..830854 (+) 426 WP_415900246.1 pilin -
  ACMXYU_RS03680 (ACMXYU_03680) - 830927..831268 (+) 342 WP_415900247.1 hypothetical protein -
  ACMXYU_RS03685 (ACMXYU_03685) nadC 831353..832198 (-) 846 WP_415900249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMXYU_RS03690 (ACMXYU_03690) ampD 832300..832860 (+) 561 WP_415900251.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44118.51 Da        Isoelectric Point: 9.4867

>NTDB_id=1096487 ACMXYU_RS03665 WP_415900242.1 827228..828448(-) (pilC) [Neptuniibacter sp. QD48_11]
MAKNAKLYTFTWQGKDKSGNKSKGKIDASSAVQAKAQLRTQGILTSKISKEQSAGLFSAKNKPIKPVDIAFFTRQMATMM
RSGVPLLQGLEITAGGIEKQKLKDIVYEIKNDVNSGTDFSTSLTRHPEHFDDLYCNLVNAGEQSGALDAMLDRIATYKEK
LESLKAKIKKALTYPTAVIIVGLIVSAILLVKVVPQFEDVFKGFGADLPAFTKFVINLSEVAQEWWWITFLIVAVIGFSF
QKAKQKSQRFRDGTDKAMLKIPIIGEILHNASIARFARTLATTFAAGVPLVNALESAAGASGNALYRDAILQIKNGVSTG
QSLQNAVTMTGIFPNMVIQMIAIGEEAGSLEMMLEKIADFYEELVDNAVDNLSSLLEPLIMAVLGVLVGGLVIAMYLPIF
QLGNVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1096487 ACMXYU_RS03665 WP_415900242.1 827228..828448(-) (pilC) [Neptuniibacter sp. QD48_11]
ATGGCTAAAAATGCCAAGTTATATACTTTCACCTGGCAAGGGAAAGATAAAAGCGGTAACAAAAGCAAAGGCAAGATAGA
TGCAAGCAGCGCAGTTCAAGCTAAAGCACAACTTCGCACTCAAGGAATCTTAACTTCTAAAATATCCAAAGAGCAATCTG
CCGGCTTATTTAGCGCAAAAAACAAGCCTATAAAGCCTGTAGACATTGCTTTCTTTACCCGTCAAATGGCTACGATGATG
CGTTCGGGCGTTCCATTACTCCAAGGACTAGAAATTACTGCTGGAGGTATAGAAAAACAAAAACTAAAAGATATTGTTTA
TGAAATTAAAAATGACGTAAACAGCGGAACAGATTTCTCAACCTCATTGACTCGGCACCCTGAACATTTTGATGATTTGT
ACTGCAACTTAGTGAATGCTGGCGAGCAATCGGGCGCATTAGATGCAATGCTAGACCGAATAGCAACTTATAAAGAAAAG
CTAGAATCACTTAAGGCAAAAATAAAGAAAGCATTAACTTACCCAACAGCTGTAATAATTGTTGGCCTAATTGTTTCAGC
TATCCTCCTTGTAAAAGTCGTACCTCAATTTGAAGATGTGTTCAAAGGTTTTGGCGCAGACCTCCCAGCCTTTACTAAAT
TCGTGATTAATTTATCTGAAGTTGCACAAGAATGGTGGTGGATCACTTTCCTTATTGTTGCTGTCATAGGCTTTTCATTC
CAAAAAGCAAAACAAAAATCTCAGAGATTTAGAGACGGAACTGACAAAGCGATGCTAAAAATACCTATCATTGGTGAAAT
ATTACACAATGCATCTATTGCTCGTTTCGCACGAACGCTTGCTACAACTTTTGCAGCAGGAGTTCCTTTAGTCAACGCTC
TAGAGTCTGCCGCCGGCGCTTCAGGTAACGCTCTATATAGGGATGCAATTTTACAAATTAAAAATGGCGTATCTACAGGG
CAATCCCTTCAAAACGCAGTAACCATGACAGGTATATTTCCCAATATGGTTATTCAGATGATTGCAATCGGGGAAGAAGC
CGGCTCACTTGAGATGATGTTAGAAAAGATTGCTGATTTTTATGAAGAGCTAGTGGATAACGCTGTAGATAACTTATCTA
GCTTACTAGAACCTCTTATTATGGCTGTTCTTGGAGTTTTAGTTGGCGGACTCGTTATAGCCATGTATCTTCCGATATTC
CAATTAGGCAACGTTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.757

100

0.569
  pilC Legionella pneumophila strain ERS1305867

56.757

100

0.569
  pilC Acinetobacter baumannii D1279779

53.769

98.03

0.527
  pilC Acinetobacter baylyi ADP1

52.764

98.03

0.517
  pilC Vibrio campbellii strain DS40M4

42.893

98.768

0.424
  pilC Vibrio cholerae strain A1552

42.786

99.015

0.424
  pilG Neisseria meningitidis 44/76-A

40.58

100

0.414
  pilG Neisseria gonorrhoeae MS11

40.338

100

0.411

Multiple sequence alignment