Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACMXYU_RS03660 Genome accession   NZ_CP180551
Coordinates   826138..827058 (-) Length   306 a.a.
NCBI ID   WP_415900240.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD48_11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 821138..832058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYU_RS03640 (ACMXYU_03640) argJ 823126..824346 (+) 1221 WP_415900235.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYU_RS03645 (ACMXYU_03645) - 824346..825305 (+) 960 WP_415900237.1 Nudix family hydrolase -
  ACMXYU_RS03650 (ACMXYU_03650) - 825283..825510 (-) 228 WP_415883654.1 DNA gyrase inhibitor YacG -
  ACMXYU_RS03655 (ACMXYU_03655) coaE 825535..826134 (-) 600 WP_415900238.1 dephospho-CoA kinase -
  ACMXYU_RS03660 (ACMXYU_03660) pilD 826138..827058 (-) 921 WP_415900240.1 prepilin peptidase Machinery gene
  ACMXYU_RS03665 (ACMXYU_03665) pilC 827228..828448 (-) 1221 WP_415900242.1 type II secretion system F family protein Machinery gene
  ACMXYU_RS03670 (ACMXYU_03670) pilB 828465..830180 (-) 1716 WP_415900244.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYU_RS03675 (ACMXYU_03675) - 830429..830854 (+) 426 WP_415900246.1 pilin -
  ACMXYU_RS03680 (ACMXYU_03680) - 830927..831268 (+) 342 WP_415900247.1 hypothetical protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34690.78 Da        Isoelectric Point: 4.4862

>NTDB_id=1096486 ACMXYU_RS03660 WP_415900240.1 826138..827058(-) (pilD) [Neptuniibacter sp. QD48_11]
MIPIINDPALAIACAFLFSLCVGSFLNVVIHRLPIMMTREWEKEIFCYLKEQEAKQQQEEQEEQEEQEEQEEQEEQEEIY
NLSVPASTCPKCAHRIRWYENIPVISWIFLGARCSSCGLPIPFRYPFVELFTAICSAYAVYVFGFNLIGLSVVVLTWVLV
CLIFIDIDHQLLPDRLTLPLLWLGLFVNSFGLFSSLEHAVYGAMAGYLSLWSIYWAFKLLTGKEGMGYGDFKLLAALGAW
AGVYQLPLIILLSSLVGAIIGIAMMLFKNHSPQNPIPFGPYLSIAGWIALIWGDTLTTLYLQLIRI

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1096486 ACMXYU_RS03660 WP_415900240.1 826138..827058(-) (pilD) [Neptuniibacter sp. QD48_11]
ATGATTCCAATTATTAATGACCCCGCGCTGGCTATCGCTTGCGCGTTTTTGTTTTCTCTTTGTGTCGGTAGTTTTTTAAA
CGTAGTCATACATCGTTTACCTATTATGATGACTCGAGAATGGGAGAAAGAAATTTTTTGCTACCTGAAGGAACAGGAAG
CTAAGCAACAGCAGGAAGAGCAGGAAGAGCAGGAAGAGCAGGAAGAGCAGGAAGAGCAGGAAGAGCAGGAAGAAATCTAT
AATCTTTCCGTTCCCGCATCTACCTGCCCCAAATGCGCACACAGAATCAGATGGTATGAAAACATACCGGTTATTAGCTG
GATATTCCTTGGCGCTAGATGCTCTTCATGCGGGTTACCGATACCTTTCAGATACCCTTTTGTAGAATTATTTACAGCTA
TTTGCTCCGCTTATGCAGTTTACGTTTTTGGCTTTAACCTGATTGGATTAAGCGTAGTAGTACTTACATGGGTACTGGTA
TGCCTGATTTTTATAGATATTGATCATCAACTACTTCCCGACCGTTTAACTCTACCTTTGCTATGGCTGGGTTTATTCGT
CAACAGTTTTGGCCTTTTCAGTTCACTAGAACACGCTGTCTATGGTGCAATGGCAGGTTACCTAAGCTTATGGTCAATCT
ACTGGGCATTTAAACTGCTAACAGGCAAAGAAGGTATGGGATACGGAGATTTCAAACTACTCGCAGCCCTTGGAGCCTGG
GCTGGAGTCTATCAATTGCCACTAATTATTCTATTAAGCTCATTAGTCGGTGCGATAATTGGTATAGCTATGATGCTGTT
TAAAAACCATTCACCTCAAAACCCTATTCCATTTGGCCCATATCTCTCAATTGCAGGATGGATAGCACTGATCTGGGGCG
ACACTCTGACAACACTCTACCTTCAACTAATAAGAATCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

51.007

97.386

0.497
  pilD Acinetobacter nosocomialis M2

51.007

97.386

0.497
  pilD Vibrio cholerae strain A1552

50.508

96.405

0.487
  pilD Vibrio campbellii strain DS40M4

48.322

97.386

0.471
  pilD Neisseria gonorrhoeae MS11

42.308

93.464

0.395

Multiple sequence alignment