Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYS_RS03710 Genome accession   NZ_CP180549
Coordinates   860129..861349 (-) Length   406 a.a.
NCBI ID   WP_415897621.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD57_21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 855129..866349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYS_RS03685 (ACMXYS_03685) argJ 856278..857498 (+) 1221 WP_415897616.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYS_RS03690 (ACMXYS_03690) - 857498..858457 (+) 960 WP_415897617.1 Nudix family hydrolase -
  ACMXYS_RS03695 (ACMXYS_03695) yacG 858435..858662 (-) 228 WP_415897618.1 DNA gyrase inhibitor YacG -
  ACMXYS_RS03700 (ACMXYS_03700) coaE 858662..859264 (-) 603 WP_415897619.1 dephospho-CoA kinase -
  ACMXYS_RS03705 (ACMXYS_03705) pilD 859268..860116 (-) 849 WP_415897620.1 prepilin peptidase Machinery gene
  ACMXYS_RS03710 (ACMXYS_03710) pilC 860129..861349 (-) 1221 WP_415897621.1 type II secretion system F family protein Machinery gene
  ACMXYS_RS03715 (ACMXYS_03715) pilB 861366..863081 (-) 1716 WP_415897622.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYS_RS03720 (ACMXYS_03720) - 863300..863809 (+) 510 WP_415897623.1 pilin -
  ACMXYS_RS03725 (ACMXYS_03725) - 863929..864075 (+) 147 WP_415897624.1 hypothetical protein -
  ACMXYS_RS03730 (ACMXYS_03730) - 864234..864575 (+) 342 WP_415897625.1 hypothetical protein -
  ACMXYS_RS03735 (ACMXYS_03735) nadC 864663..865508 (-) 846 WP_415897626.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMXYS_RS03740 (ACMXYS_03740) ampD 865610..866155 (+) 546 WP_415897627.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44227.60 Da        Isoelectric Point: 9.3160

>NTDB_id=1096441 ACMXYS_RS03710 WP_415897621.1 860129..861349(-) (pilC) [Neptuniibacter sp. QD57_21]
MAKDAKLYTFTWQGKDKSGNKSKGKIDAINAASAKAHLRKQGILTSRIAKERSAGMFSAKNKPVKPVDIAFFTRQMATMM
RSGVPLLQGLEITAGGIEKQKLKDIVYEIKNDVNSGTDFSTSLTKHPQHFDDLYCNLVNAGEQSGALDAMLDRIATYKEK
LESLKAKIKKALTYPTAVIIVGIIVSAILLVKVVPQFEDVFTSFGAELPAFTQWVINLSEIAQEWWWIILIGFVIFGFAF
QKAREKSAKFRDSVDKAVLKIPVIGEILHNASIARFARTLSTTFAAGVPLVNALDSAAGASGNALYRDAILQIKNGVSTG
QSLQNAVTMTGIFPNMTIQMIAIGEEAGSLEMMLEKIADFYEEQVDNAVDNLSSLLEPLIMVVLGVLVGGLVVAMYLPIF
QLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1096441 ACMXYS_RS03710 WP_415897621.1 860129..861349(-) (pilC) [Neptuniibacter sp. QD57_21]
ATGGCTAAAGATGCCAAGCTTTACACTTTCACCTGGCAAGGAAAAGACAAAAGCGGTAATAAAAGCAAAGGAAAAATCGA
TGCAATTAATGCCGCTTCAGCAAAAGCTCATTTACGCAAACAAGGGATCTTAACGTCCAGAATTGCCAAAGAGCGCTCTG
CAGGTATGTTCAGCGCCAAAAATAAACCTGTTAAGCCTGTAGATATTGCTTTTTTCACCCGCCAAATGGCTACCATGATG
CGCTCCGGGGTGCCTTTACTGCAAGGCTTGGAAATCACTGCTGGCGGTATTGAAAAACAAAAATTAAAAGACATCGTCTA
TGAAATCAAGAATGATGTTAACAGTGGTACCGATTTCTCCACATCCTTAACCAAGCACCCACAACACTTTGATGATCTGT
ATTGCAACTTAGTTAATGCTGGCGAGCAATCAGGCGCTCTAGATGCAATGCTTGATCGTATTGCGACATATAAAGAAAAA
CTAGAATCATTAAAAGCCAAGATCAAAAAGGCACTAACCTATCCCACAGCTGTAATTATTGTTGGTATTATTGTTTCGGC
AATTCTTCTGGTTAAGGTAGTCCCACAATTTGAAGATGTGTTTACTAGCTTTGGAGCAGAACTACCCGCTTTTACCCAAT
GGGTTATAAACCTGTCTGAAATAGCTCAAGAATGGTGGTGGATTATTTTAATAGGCTTTGTCATATTTGGATTCGCGTTT
CAGAAAGCTAGAGAGAAGTCTGCTAAATTTAGAGATAGTGTCGACAAAGCCGTACTTAAAATCCCAGTTATAGGCGAAAT
ACTGCACAACGCATCTATAGCTAGATTTGCTAGGACTCTATCCACTACCTTTGCAGCAGGTGTACCTCTAGTTAATGCTT
TAGATTCCGCAGCGGGCGCTTCAGGCAATGCATTATACCGAGATGCCATCTTACAAATTAAAAACGGTGTATCTACAGGC
CAATCCTTACAAAACGCAGTAACCATGACCGGCATATTTCCCAATATGACTATCCAAATGATAGCGATTGGCGAAGAAGC
AGGCTCTCTTGAAATGATGCTAGAGAAGATCGCTGATTTTTATGAAGAACAAGTAGATAACGCTGTAGATAACCTTTCAA
GCCTATTAGAACCTTTGATTATGGTTGTATTAGGCGTGCTAGTTGGTGGACTTGTTGTTGCTATGTACCTTCCAATCTTC
CAGCTTGGTCAAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.985

100

0.581
  pilC Legionella pneumophila strain ERS1305867

55.97

99.015

0.554
  pilC Acinetobacter baylyi ADP1

55

98.522

0.542
  pilC Acinetobacter baumannii D1279779

54.774

98.03

0.537
  pilG Neisseria gonorrhoeae MS11

43.25

98.522

0.426
  pilG Neisseria meningitidis 44/76-A

43

98.522

0.424
  pilC Vibrio campbellii strain DS40M4

42.145

98.768

0.416
  pilC Vibrio cholerae strain A1552

42

98.522

0.414

Multiple sequence alignment