Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACMXYS_RS03705 Genome accession   NZ_CP180549
Coordinates   859268..860116 (-) Length   282 a.a.
NCBI ID   WP_415897620.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD57_21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 854268..865116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYS_RS03685 (ACMXYS_03685) argJ 856278..857498 (+) 1221 WP_415897616.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYS_RS03690 (ACMXYS_03690) - 857498..858457 (+) 960 WP_415897617.1 Nudix family hydrolase -
  ACMXYS_RS03695 (ACMXYS_03695) yacG 858435..858662 (-) 228 WP_415897618.1 DNA gyrase inhibitor YacG -
  ACMXYS_RS03700 (ACMXYS_03700) coaE 858662..859264 (-) 603 WP_415897619.1 dephospho-CoA kinase -
  ACMXYS_RS03705 (ACMXYS_03705) pilD 859268..860116 (-) 849 WP_415897620.1 prepilin peptidase Machinery gene
  ACMXYS_RS03710 (ACMXYS_03710) pilC 860129..861349 (-) 1221 WP_415897621.1 type II secretion system F family protein Machinery gene
  ACMXYS_RS03715 (ACMXYS_03715) pilB 861366..863081 (-) 1716 WP_415897622.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYS_RS03720 (ACMXYS_03720) - 863300..863809 (+) 510 WP_415897623.1 pilin -
  ACMXYS_RS03725 (ACMXYS_03725) - 863929..864075 (+) 147 WP_415897624.1 hypothetical protein -
  ACMXYS_RS03730 (ACMXYS_03730) - 864234..864575 (+) 342 WP_415897625.1 hypothetical protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31790.93 Da        Isoelectric Point: 6.9896

>NTDB_id=1096440 ACMXYS_RS03705 WP_415897620.1 859268..860116(-) (pilD) [Neptuniibacter sp. QD57_21]
MNIIIFDPAWAIACAFLFSLCVGSFLNVVIHRLPIMMQREWEREISADKEIDPEPYNLSVPASTCPKCQHKIRWYENIPV
LSWIFLRAKCSSCGLHIPFRYPFVELFTAICSAYAVYVFGFNLIGLSLVVLTWVLVCLIFIDIDHQLLPDRLTLPLLWLG
LFVNSFGLFASLEHAVYGAMAGYLSLWSIYWVFKLLTGKEGMGYGDFKLLAALGAWAGIYQLPLIILLSSLVGAIIGIAM
MLFKNHSSQNPIPFGPYLAIAGWIALIWGDTLTTLYLQLIRI

Nucleotide


Download         Length: 849 bp        

>NTDB_id=1096440 ACMXYS_RS03705 WP_415897620.1 859268..860116(-) (pilD) [Neptuniibacter sp. QD57_21]
ATGAATATAATTATTTTTGATCCCGCGTGGGCTATTGCCTGCGCGTTTTTATTTTCTCTATGTGTTGGTAGTTTTCTTAA
CGTAGTCATTCATCGCTTACCCATTATGATGCAAAGGGAATGGGAAAGGGAAATATCCGCTGATAAAGAGATCGATCCAG
AGCCTTACAACCTTTCAGTACCTGCATCCACTTGCCCTAAGTGTCAACACAAAATCAGATGGTATGAAAACATACCCGTT
CTCAGCTGGATTTTCCTCCGAGCAAAATGCTCATCCTGCGGATTGCATATCCCTTTCCGCTATCCGTTTGTGGAATTATT
TACAGCTATTTGCTCCGCTTATGCCGTTTACGTTTTTGGCTTTAACCTGATCGGTCTCAGTTTAGTAGTCCTTACTTGGG
TGCTGGTTTGTCTAATATTTATTGATATTGATCATCAACTTTTACCTGACCGCTTAACCCTTCCTTTGCTATGGCTAGGC
TTATTCGTCAACAGTTTTGGGTTATTTGCATCTCTAGAACATGCGGTCTATGGAGCTATGGCAGGCTACCTAAGCTTATG
GTCAATCTACTGGGTATTTAAACTACTAACTGGCAAAGAAGGTATGGGGTATGGTGATTTTAAATTGCTTGCAGCTCTAG
GCGCTTGGGCAGGTATATATCAATTGCCACTGATTATTCTATTAAGCTCATTAGTCGGTGCGATCATTGGTATAGCTATG
ATGCTGTTTAAAAACCATTCATCTCAAAACCCTATTCCATTTGGCCCATATCTCGCAATTGCAGGATGGATAGCACTGAT
CTGGGGCGATACGCTGACAACACTCTACCTTCAACTAATAAGAATCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-118)

Type IV leader peptidase family (Peptidase_A24)

(130-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.901

100

0.539
  pilD Vibrio campbellii strain DS40M4

51.399

100

0.521
  pilD Acinetobacter baumannii D1279779

55.263

94.326

0.521
  pilD Acinetobacter nosocomialis M2

54.887

94.326

0.518
  pilD Neisseria gonorrhoeae MS11

46.442

94.681

0.44

Multiple sequence alignment