Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYN_RS03955 Genome accession   NZ_CP180545
Coordinates   895875..897095 (-) Length   406 a.a.
NCBI ID   WP_415893589.1    Uniprot ID   -
Organism   Neptuniibacter sp. PT8_73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 890875..902095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYN_RS03930 (ACMXYN_03930) argJ 892024..893244 (+) 1221 WP_415893584.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYN_RS03935 (ACMXYN_03935) - 893244..894203 (+) 960 WP_415893585.1 Nudix family hydrolase -
  ACMXYN_RS03940 (ACMXYN_03940) yacG 894181..894408 (-) 228 WP_415893586.1 DNA gyrase inhibitor YacG -
  ACMXYN_RS03945 (ACMXYN_03945) coaE 894408..895010 (-) 603 WP_415893587.1 dephospho-CoA kinase -
  ACMXYN_RS03950 (ACMXYN_03950) pilD 895014..895862 (-) 849 WP_415893588.1 prepilin peptidase Machinery gene
  ACMXYN_RS03955 (ACMXYN_03955) pilC 895875..897095 (-) 1221 WP_415893589.1 type II secretion system F family protein Machinery gene
  ACMXYN_RS03960 (ACMXYN_03960) pilB 897112..898827 (-) 1716 WP_415893590.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYN_RS03965 (ACMXYN_03965) - 899066..899572 (+) 507 WP_415893591.1 pilin -
  ACMXYN_RS03970 (ACMXYN_03970) - 899754..900095 (+) 342 WP_415893592.1 hypothetical protein -
  ACMXYN_RS03975 (ACMXYN_03975) nadC 900180..901025 (-) 846 WP_415893593.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMXYN_RS03980 (ACMXYN_03980) ampD 901127..901672 (+) 546 WP_415893594.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43916.22 Da        Isoelectric Point: 9.6555

>NTDB_id=1096372 ACMXYN_RS03955 WP_415893589.1 895875..897095(-) (pilC) [Neptuniibacter sp. PT8_73]
MAKDAKLSTFTWQGKDKSGNKSKGKIDANNAASAKALLRKQGILTSRIAKERSAGMFSAKNKSVKPVDIAFFTRQMATMM
RSGVPLLQGLEITAGGIEKQKLKDIVYEIKNDVNSGTDFSTALTKHPQHFDDLYCNLVNAGEQSGALDAMLDRIATYKEK
LESLKAKIKKALTYPTAVIVVGIVVSAILLVKVVPQFEDVFKSFGAELPAFTQFVISLSETAQEWWWVALIGVALFGFVF
QKARQKSAKFRDAVDKAILKIPVIGEILHNASIARFARTLSTTFAAGVPLVNALDSAAGASGNALYRDAILQIKNGVSTG
QSLQNAVTMTGIFPNMTIQMIAIGEEAGSLEMMLEKIADFYEEQVDNAVDNLSSLLEPLIMVVLGVLVGGLVVAMYLPIF
QLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1096372 ACMXYN_RS03955 WP_415893589.1 895875..897095(-) (pilC) [Neptuniibacter sp. PT8_73]
ATGGCTAAAGATGCCAAGCTAAGTACTTTCACCTGGCAAGGGAAAGATAAAAGCGGTAATAAGAGCAAAGGGAAGATTGA
TGCTAATAACGCGGCATCAGCAAAGGCCCTTCTTCGAAAGCAAGGAATCTTAACATCAAGAATTGCTAAAGAGCGCTCTG
CAGGCATGTTCAGCGCAAAAAACAAATCCGTTAAGCCTGTTGATATAGCTTTTTTTACCCGTCAAATGGCCACCATGATG
CGTTCTGGTGTACCTCTACTACAAGGCCTAGAGATAACCGCCGGTGGTATTGAAAAACAAAAGCTGAAAGACATTGTCTA
TGAAATCAAGAATGATGTTAACAGCGGCACAGATTTTTCTACAGCTTTGACCAAACATCCACAACACTTCGATGATCTGT
ATTGCAATTTAGTTAATGCTGGTGAGCAATCTGGTGCGCTGGATGCAATGCTGGACCGTATTGCTACGTACAAAGAAAAA
TTAGAATCATTAAAAGCCAAAATCAAAAAAGCTCTAACATATCCAACAGCTGTTATCGTTGTCGGTATTGTTGTATCAGC
AATCCTTCTTGTAAAAGTAGTACCTCAATTTGAAGATGTATTTAAAAGCTTTGGGGCTGAACTCCCCGCTTTTACTCAAT
TTGTTATTAGTCTTTCTGAAACAGCTCAAGAATGGTGGTGGGTTGCTTTAATTGGCGTTGCCTTATTTGGTTTTGTGTTT
CAAAAAGCACGGCAAAAGTCTGCGAAATTTAGAGACGCTGTAGACAAAGCTATTCTTAAGATCCCCGTTATTGGAGAGAT
ACTTCACAATGCCTCTATAGCAAGGTTTGCGCGAACCTTATCAACCACGTTTGCAGCAGGTGTACCTTTAGTTAATGCTT
TAGATTCAGCTGCTGGCGCCTCAGGCAATGCGCTTTATAGGGACGCTATCTTACAGATCAAAAATGGTGTTTCTACAGGT
CAGTCTCTACAAAACGCCGTCACAATGACTGGCATTTTTCCAAACATGACAATCCAGATGATTGCTATAGGTGAAGAAGC
CGGCTCACTTGAAATGATGCTAGAAAAAATCGCCGATTTTTATGAAGAACAAGTAGATAACGCTGTAGATAACCTTTCAA
GCTTACTAGAGCCTTTAATTATGGTTGTATTGGGCGTGCTAGTTGGTGGGCTTGTTGTGGCAATGTACCTTCCAATCTTC
CAGCTTGGTCAAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.248

100

0.574
  pilC Legionella pneumophila strain ERS1305867

55.473

99.015

0.549
  pilC Acinetobacter baylyi ADP1

54.342

99.261

0.539
  pilC Acinetobacter baumannii D1279779

54.5

98.522

0.537
  pilG Neisseria gonorrhoeae MS11

43.069

99.507

0.429
  pilC Vibrio cholerae strain A1552

42.786

99.015

0.424
  pilG Neisseria meningitidis 44/76-A

42.04

99.015

0.416
  pilC Vibrio campbellii strain DS40M4

41.687

99.261

0.414

Multiple sequence alignment