Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYI_RS02450 Genome accession   NZ_CP180481
Coordinates   513025..514242 (+) Length   405 a.a.
NCBI ID   WP_415771470.1    Uniprot ID   -
Organism   Pseudomonas sp. LB3P38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508025..519242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYI_RS02430 - 509556..509852 (+) 297 WP_123367810.1 DUF2845 domain-containing protein -
  ACMXYI_RS02435 - 510025..510378 (-) 354 WP_415771464.1 BON domain-containing protein -
  ACMXYI_RS02440 - 510692..511096 (-) 405 WP_415771466.1 pilin -
  ACMXYI_RS02445 pilB 511322..513022 (+) 1701 WP_415771468.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYI_RS02450 pilC 513025..514242 (+) 1218 WP_415771470.1 type II secretion system F family protein Machinery gene
  ACMXYI_RS02455 pilD 514244..515116 (+) 873 WP_415771472.1 prepilin peptidase Machinery gene
  ACMXYI_RS02460 coaE 515113..515736 (+) 624 WP_309674604.1 dephospho-CoA kinase -
  ACMXYI_RS02465 yacG 515733..515933 (+) 201 WP_140681081.1 DNA gyrase inhibitor YacG -
  ACMXYI_RS02470 - 515937..516152 (-) 216 WP_033054332.1 hypothetical protein -
  ACMXYI_RS02475 - 516216..516905 (-) 690 WP_415771473.1 energy-coupling factor ABC transporter permease -
  ACMXYI_RS02480 - 517792..518034 (+) 243 WP_415771474.1 DUF2790 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44382.30 Da        Isoelectric Point: 10.0022

>NTDB_id=1096087 ACMXYI_RS02450 WP_415771470.1 513025..514242(+) (pilC) [Pseudomonas sp. LB3P38]
MAVKAVKISVYTWEGTDRKGTKITGELSGQNPALIKAQLRKQGITPGKVRKKSTSIFNMGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRTLIDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFESVFKGFGAELPAFTVMVIGLSQFMQDWWWAMLGVLIAAIFGVR
RAFKTSQAFRDRMDTWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRTSGIFPNMAIQMTAIGEESGALDDMLDKVASFYENEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1096087 ACMXYI_RS02450 WP_415771470.1 513025..514242(+) (pilC) [Pseudomonas sp. LB3P38]
ATGGCGGTCAAAGCAGTAAAAATCAGCGTCTACACCTGGGAGGGTACAGACCGCAAAGGCACCAAAATAACGGGTGAATT
GAGCGGTCAGAATCCGGCATTGATCAAGGCCCAATTGCGCAAGCAGGGCATCACCCCCGGCAAGGTACGCAAGAAGTCCA
CCTCGATTTTCAACATGGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAGATGGCAACGATGATGAAG
GCCGGAGTACCGCTGTTGCAGTCCTTCGACATCATCGGTGAGGGCTTTGATAACCCAGCCATGCGCACACTGATTGACGA
GGTGAAACAGGAAGTCGCGGCGGGTAACAGCTTCGCCGCTTCCCTGCGCAAAAAGCCTCAGTATTTCGATGAGCTCTACT
GCAACCTGGTCGATGCCGGCGAGCAGGCCGGTGCCCTCGATACCCTGCTGGAGAGAGTGGCGACCTATAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGCTGGCGGTGGTGTTCGTTGCGATCATTGTGACCGGGAT
TCTGCTGGTCAAAGTGGTGCCGCAGTTCGAATCGGTGTTCAAAGGGTTTGGCGCCGAATTGCCAGCCTTCACGGTGATGG
TCATCGGCCTCTCGCAATTCATGCAGGACTGGTGGTGGGCGATGCTCGGCGTGCTGATCGCGGCCATCTTCGGTGTGCGC
CGCGCCTTTAAAACGTCGCAAGCCTTTCGCGACCGGATGGACACCTGGCTGCTGAAACTGCCGCTGATTGGCACGCTGAT
GTACAAGTCCGCCGTGGCCCGTTACGCCCGCACGCTGTCGACTACCTTTGCGGCAGGTGTGCCGCTGGTGGAAGCCCTGG
ATTCGGTGGCCGGCGCGACCGGCAACATCGTGTTCAAGCGTGCGGTGCTGCGCATCAAGCAGGACGTATCCACCGGCATG
CAGCTGAATTTCTCCATGCGCACCTCCGGCATCTTTCCGAACATGGCGATCCAGATGACCGCCATTGGCGAAGAGTCCGG
CGCGCTGGACGACATGCTCGACAAAGTCGCGAGCTTCTATGAGAACGAAGTGGACAACATGGTCGATAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGTGGCCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.086

100

0.731
  pilC Acinetobacter baylyi ADP1

59.804

100

0.602
  pilC Acinetobacter baumannii D1279779

58.824

100

0.593
  pilC Legionella pneumophila strain ERS1305867

54.04

97.778

0.528
  pilG Neisseria meningitidis 44/76-A

42.716

100

0.427
  pilG Neisseria gonorrhoeae MS11

42.786

99.259

0.425
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.976

100

0.415
  pilC Thermus thermophilus HB27

37.905

99.012

0.375

Multiple sequence alignment