Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXD4_RS02715 Genome accession   NZ_CP180476
Coordinates   596880..598097 (+) Length   405 a.a.
NCBI ID   WP_205452935.1    Uniprot ID   -
Organism   Methylomonas sp. TEB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 591880..603097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXD4_RS02700 (ACMXD4_02700) - 592353..592757 (-) 405 WP_415879764.1 hypothetical protein -
  ACMXD4_RS02705 (ACMXD4_02705) thiC 593093..594961 (+) 1869 WP_415879765.1 phosphomethylpyrimidine synthase ThiC -
  ACMXD4_RS02710 (ACMXD4_02710) pilB 595162..596877 (+) 1716 WP_171696693.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXD4_RS02715 (ACMXD4_02715) pilC 596880..598097 (+) 1218 WP_205452935.1 type II secretion system F family protein Machinery gene
  ACMXD4_RS02720 (ACMXD4_02720) pilD 598173..599039 (+) 867 WP_415879766.1 prepilin peptidase Machinery gene
  ACMXD4_RS02725 (ACMXD4_02725) coaE 599043..599654 (+) 612 WP_415879767.1 dephospho-CoA kinase -
  ACMXD4_RS02730 (ACMXD4_02730) zapD 599651..600424 (+) 774 WP_051669750.1 cell division protein ZapD -
  ACMXD4_RS02735 (ACMXD4_02735) yacG 600424..600627 (+) 204 WP_415879768.1 DNA gyrase inhibitor YacG -
  ACMXD4_RS02740 (ACMXD4_02740) - 600644..601588 (-) 945 WP_415879769.1 Nudix family hydrolase -
  ACMXD4_RS02745 (ACMXD4_02745) argJ 601601..602815 (-) 1215 WP_415879770.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44327.23 Da        Isoelectric Point: 6.2987

>NTDB_id=1095954 ACMXD4_RS02715 WP_205452935.1 596880..598097(+) (pilC) [Methylomonas sp. TEB]
MAKQDEQIEFNWDGFDRQNKKTKGTISAKSEVIARTELRRMGIRVIGIKAKSKPLFGARVQKITPGDIAVFARQLATMLA
AGVPLVQSFDIIGKGHDNASMSELLLSIKADVEGGDTLAQALNRKPLYFDALFCNLVEAGEHAGVLETLLDKIATYKEKT
ESIKKKVKKALTYPIAVLVVAFIVTAILLIFVVPVFEDLFKGFGADLPAFTQFVIELSAWVQEWWWAVIGVIAITAYVFN
YFKKRSKAFNHFLDKTLLKIPVVGMILEKSAIARFARTLSTMSAAGVPLVEALVSVAGACGNILFYEAVMAVRDDVSTGQ
QLKFALETTGMFPNMVVQMVAIGEESGSIDAMLDKVADFYEEEVDNLVDNLSSLMEPIIMVILGILVGGLIVAMYLPIFK
LGAAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1095954 ACMXD4_RS02715 WP_205452935.1 596880..598097(+) (pilC) [Methylomonas sp. TEB]
ATGGCAAAGCAAGACGAACAAATCGAGTTCAATTGGGACGGTTTCGATAGGCAAAACAAGAAAACCAAAGGTACCATCAG
CGCCAAGAGCGAGGTCATTGCGCGCACCGAATTAAGGCGGATGGGCATTCGGGTCATCGGTATCAAAGCCAAGTCCAAGC
CCTTGTTCGGTGCCAGAGTGCAGAAAATCACGCCCGGCGACATCGCGGTGTTCGCCAGGCAGTTGGCGACTATGCTGGCC
GCTGGTGTGCCTTTGGTGCAATCGTTCGATATTATCGGCAAGGGACACGACAACGCCAGTATGTCGGAGTTGCTGTTATC
GATAAAAGCCGATGTGGAAGGTGGCGATACCCTGGCCCAGGCCTTAAACCGTAAGCCACTGTATTTTGATGCGCTGTTCT
GCAATTTGGTCGAAGCCGGCGAACATGCCGGGGTATTGGAAACTTTGCTCGACAAGATTGCCACCTACAAAGAAAAAACC
GAATCGATCAAAAAGAAGGTTAAAAAAGCATTGACCTACCCGATTGCAGTGTTGGTCGTCGCGTTTATCGTCACCGCGAT
TTTGCTGATTTTCGTGGTGCCGGTGTTTGAGGATTTGTTTAAAGGCTTTGGCGCCGACCTACCGGCATTTACCCAATTTG
TTATTGAGCTGTCGGCGTGGGTGCAGGAATGGTGGTGGGCGGTGATTGGCGTGATCGCCATTACCGCTTACGTGTTCAAT
TATTTTAAAAAGCGCTCGAAGGCGTTTAACCATTTTCTCGATAAAACTTTGCTGAAAATCCCGGTTGTCGGGATGATTCT
GGAAAAATCGGCCATCGCTCGTTTTGCGAGAACGCTGTCAACGATGTCTGCGGCTGGCGTACCCTTGGTTGAAGCACTGG
TTTCGGTGGCAGGGGCTTGCGGCAATATTTTATTTTACGAAGCGGTGATGGCTGTGCGCGACGACGTTTCCACCGGCCAG
CAATTGAAGTTTGCTTTGGAGACCACCGGCATGTTTCCGAATATGGTGGTGCAAATGGTCGCGATTGGCGAGGAGTCCGG
TTCCATTGATGCGATGCTGGATAAAGTCGCGGACTTTTACGAAGAAGAGGTCGATAACCTGGTCGATAACTTGAGCAGCT
TGATGGAGCCTATCATTATGGTGATCCTGGGTATCCTGGTCGGCGGCTTGATTGTCGCGATGTATCTGCCTATCTTCAAG
TTGGGCGCCGCTATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

59.296

98.272

0.583
  pilC Pseudomonas stutzeri DSM 10701

57.576

97.778

0.563
  pilC Acinetobacter baumannii D1279779

54.408

98.025

0.533
  pilC Acinetobacter baylyi ADP1

52.696

100

0.531
  pilG Neisseria meningitidis 44/76-A

47.436

96.296

0.457
  pilG Neisseria gonorrhoeae MS11

47.436

96.296

0.457
  pilC Vibrio cholerae strain A1552

42.748

97.037

0.415
  pilC Vibrio campbellii strain DS40M4

40.863

97.284

0.398

Multiple sequence alignment