Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMDW7_RS03930 Genome accession   NZ_CP180191
Coordinates   866783..868003 (-) Length   406 a.a.
NCBI ID   WP_377305379.1    Uniprot ID   -
Organism   Piscinibacterium candidicorallinum strain LMG 29480     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 861783..873003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMDW7_RS03900 (ACMDW7_03900) - 862206..863225 (+) 1020 WP_377305388.1 ATP-binding protein -
  ACMDW7_RS03905 (ACMDW7_03905) - 863222..864160 (+) 939 WP_377305387.1 Nudix family hydrolase -
  ACMDW7_RS03910 (ACMDW7_03910) - 864218..864436 (-) 219 WP_377305386.1 DNA gyrase inhibitor YacG -
  ACMDW7_RS03915 (ACMDW7_03915) zapD 864451..865206 (-) 756 WP_377305385.1 cell division protein ZapD -
  ACMDW7_RS03920 (ACMDW7_03920) coaE 865280..865885 (-) 606 WP_377305383.1 dephospho-CoA kinase -
  ACMDW7_RS03925 (ACMDW7_03925) pilD 865898..866770 (-) 873 WP_377305381.1 prepilin peptidase Machinery gene
  ACMDW7_RS03930 (ACMDW7_03930) pilC 866783..868003 (-) 1221 WP_377305379.1 type II secretion system F family protein Machinery gene
  ACMDW7_RS03935 (ACMDW7_03935) pilB 868047..869774 (-) 1728 WP_377305377.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMDW7_RS03945 (ACMDW7_03945) - 870101..871030 (-) 930 WP_377306147.1 polyprenyl synthetase family protein -
  ACMDW7_RS03950 (ACMDW7_03950) rplU 871288..871596 (+) 309 Protein_777 50S ribosomal protein L21 -
  ACMDW7_RS03955 (ACMDW7_03955) - 871630..871893 (+) 264 WP_377306145.1 DUF4332 domain-containing protein -
  ACMDW7_RS03960 (ACMDW7_03960) rpmA 871907..872164 (+) 258 WP_054125708.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44143.02 Da        Isoelectric Point: 9.7528

>NTDB_id=1094363 ACMDW7_RS03930 WP_377305379.1 866783..868003(-) (pilC) [Piscinibacterium candidicorallinum strain LMG 29480]
MATATRKAAAPDALYLWEGKDKVGRILKGEMRAGGEAVVQSALRRKGILPTKVKKQRVSGGRKVTDKEISIFTRQLATML
KAGVPMLQCFDIVSRGSTNPAFSRMMNDIRADVETGSSLATAFRKFPQYFDALFCNLIAAGEQAGILDTLLERLAVYKEK
TLALKGKIKSAMFYPVSIIVVAFVVTAVIMIFVIPSFKEIFTSFGAELPAPTVIVIAMSDFFVTYWYLIFGVTFGSLYFF
FQAWKRSPKVQMFMDRVLLKAPVVGDLLMKGSVARWSRTLSTMFAAGVPLVEALDSVGGAAGNAVYTQATRGIQNEVSIG
TSLGVAMQNSNVFPNMAIQMTSIGEESGALDDMLAKVADFYEREVDEAVDALSSLMEPLIMVVLGTLIGGIVIAMYLPIF
KLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1094363 ACMDW7_RS03930 WP_377305379.1 866783..868003(-) (pilC) [Piscinibacterium candidicorallinum strain LMG 29480]
ATGGCCACAGCAACCCGCAAGGCAGCCGCTCCGGACGCACTCTATCTCTGGGAGGGCAAGGACAAGGTCGGACGGATCCT
GAAAGGCGAGATGCGCGCAGGCGGCGAGGCCGTCGTCCAGTCGGCGCTGCGCCGCAAAGGCATTCTGCCCACCAAGGTCA
AGAAGCAGCGCGTCTCAGGCGGTCGAAAGGTCACCGACAAGGAGATCTCGATCTTTACGCGCCAGCTGGCAACGATGCTC
AAGGCCGGCGTGCCTATGCTTCAGTGCTTTGACATTGTCAGCCGCGGATCGACCAATCCGGCCTTCTCGCGCATGATGAA
TGACATCAGAGCTGACGTGGAGACTGGGTCCAGCCTCGCGACTGCGTTTCGGAAGTTTCCTCAGTACTTCGACGCGCTGT
TCTGCAATCTGATCGCTGCGGGCGAGCAAGCCGGTATCTTGGACACGCTCTTGGAACGTCTGGCGGTCTACAAGGAGAAG
ACGCTCGCCCTGAAGGGAAAGATCAAGTCGGCGATGTTCTACCCGGTGTCCATCATCGTCGTAGCGTTTGTGGTCACCGC
AGTGATCATGATCTTTGTGATTCCTTCCTTCAAGGAGATCTTCACCAGCTTTGGTGCAGAGCTCCCCGCGCCCACGGTCA
TTGTGATCGCAATGTCCGATTTCTTCGTTACCTATTGGTATCTGATATTCGGCGTCACCTTCGGGTCGCTCTATTTCTTT
TTCCAAGCGTGGAAGCGAAGCCCAAAGGTACAGATGTTCATGGATCGAGTGCTCTTGAAGGCGCCGGTAGTTGGTGATCT
GTTGATGAAGGGTTCCGTGGCGAGATGGAGCCGTACGCTTTCGACGATGTTCGCGGCAGGCGTGCCCCTCGTGGAAGCGC
TCGATTCAGTGGGCGGCGCAGCAGGCAACGCGGTCTACACCCAGGCAACCCGCGGCATCCAGAATGAGGTCAGTATCGGC
ACCTCGCTGGGTGTTGCCATGCAGAACTCCAACGTGTTCCCAAATATGGCCATTCAGATGACCTCGATCGGCGAGGAGTC
GGGTGCGCTGGATGACATGCTCGCCAAGGTTGCGGACTTCTATGAGCGCGAAGTCGACGAAGCCGTTGATGCGCTCTCGT
CGTTGATGGAACCGCTGATCATGGTCGTCCTTGGCACGTTGATCGGCGGCATCGTGATCGCGATGTACCTGCCGATCTTC
AAGCTCGGTTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.35

99.261

0.53
  pilC Acinetobacter baylyi ADP1

52.513

98.03

0.515
  pilC Acinetobacter baumannii D1279779

51.134

97.783

0.5
  pilC Legionella pneumophila strain ERS1305867

50.248

99.507

0.5
  pilG Neisseria gonorrhoeae MS11

49.75

98.522

0.49
  pilG Neisseria meningitidis 44/76-A

49.5

98.522

0.488
  pilC Vibrio campbellii strain DS40M4

39.547

97.783

0.387
  pilC Vibrio cholerae strain A1552

39.25

98.522

0.387
  pilC Thermus thermophilus HB27

38.847

98.276

0.382

Multiple sequence alignment