Detailed information NTG1094362

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMDW7_RS03925
• Genome accession: NZ_CP180191
• Coordinates: 865898..866770 (-)
• Length: 290 a.a.
• NCBI ID: WP_377305381.1
• Uniprot ID: -
• Organism: Piscinibacterium candidicorallinum strain LMG 29480
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 860898..871770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMDW7_RS03895 (ACMDW7_03895)	argJ	860999..862225 (+)	1227	WP_377305390.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACMDW7_RS03900 (ACMDW7_03900)	-	862206..863225 (+)	1020	WP_377305388.1	ATP-binding protein	-
ACMDW7_RS03905 (ACMDW7_03905)	-	863222..864160 (+)	939	WP_377305387.1	Nudix family hydrolase	-
ACMDW7_RS03910 (ACMDW7_03910)	-	864218..864436 (-)	219	WP_377305386.1	DNA gyrase inhibitor YacG	-
ACMDW7_RS03915 (ACMDW7_03915)	zapD	864451..865206 (-)	756	WP_377305385.1	cell division protein ZapD	-
ACMDW7_RS03920 (ACMDW7_03920)	coaE	865280..865885 (-)	606	WP_377305383.1	dephospho-CoA kinase	-
ACMDW7_RS03925 (ACMDW7_03925)	pilD	865898..866770 (-)	873	WP_377305381.1	prepilin peptidase	Machinery gene
ACMDW7_RS03930 (ACMDW7_03930)	pilC	866783..868003 (-)	1221	WP_377305379.1	type II secretion system F family protein	Machinery gene
ACMDW7_RS03935 (ACMDW7_03935)	pilB	868047..869774 (-)	1728	WP_377305377.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACMDW7_RS03945 (ACMDW7_03945)	-	870101..871030 (-)	930	WP_377306147.1	polyprenyl synthetase family protein	-
ACMDW7_RS03950 (ACMDW7_03950)	rplU	871288..871596 (+)	309	Protein_777	50S ribosomal protein L21	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31236.40 Da
• Isoelectric Point: 7.9414

>NTDB_id=1094362 ACMDW7_RS03925 WP_377305381.1 865898..866770(-) (pilD) [Piscinibacterium candidicorallinum strain LMG 29480]
MSELLDLLAREPGLATACLGVLGLLIGSFLNVVIHRMPKIMEAMHVADCASTADEWVVPQRTWRYLVTPRSACPKCGHVL
RWYENIPVISWIFLKAQCSNCKTPIALRYPLVEVLGGLSGVFAVLAFGPTAKALAAFVFLLILITLAFIDADTQLLPDDL
TLPLLWLGLIVNIGGMFAPLSDAVIGAIAGYLVLWTVYWLFKLLTGKEGMGYGDFKLLAALGAWFGWQALPAVILASSVV
GAVLGGLMMLLARLGRGQQFPFGPYLAGAGAVVLFYGPAINAWYLGLLAR

Nucleotide

• Length: 873 bp

>NTDB_id=1094362 ACMDW7_RS03925 WP_377305381.1 865898..866770(-) (pilD) [Piscinibacterium candidicorallinum strain LMG 29480]
ATGAGCGAACTGCTCGATCTTCTAGCGCGCGAACCTGGGCTGGCGACCGCCTGCCTGGGCGTGCTGGGCCTCCTTATCGG
CAGCTTTCTGAACGTGGTCATCCACCGGATGCCCAAGATCATGGAAGCCATGCACGTGGCGGACTGCGCGTCCACAGCCG
ACGAATGGGTTGTGCCGCAGCGCACCTGGCGCTATTTGGTCACGCCGCGCTCAGCATGCCCGAAGTGCGGTCATGTGCTG
CGCTGGTACGAGAACATCCCGGTCATCAGCTGGATTTTCCTCAAGGCACAGTGCAGCAACTGCAAGACGCCGATCGCTCT
GCGCTACCCGCTGGTTGAAGTGCTGGGCGGGCTCTCGGGTGTGTTTGCCGTACTGGCGTTCGGTCCGACCGCCAAGGCTT
TGGCCGCGTTCGTGTTCCTGCTGATACTGATCACGCTGGCTTTCATCGACGCCGACACGCAATTGCTGCCGGACGATCTG
ACGCTGCCGCTGCTCTGGCTGGGGCTGATCGTGAATATCGGCGGAATGTTCGCGCCGCTGTCCGATGCCGTGATCGGCGC
GATCGCGGGCTACCTGGTGCTCTGGACGGTCTATTGGCTCTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTACGGCG
ACTTCAAGCTGCTTGCTGCACTGGGCGCGTGGTTCGGCTGGCAGGCATTGCCGGCCGTCATCCTCGCCAGTTCGGTGGTC
GGTGCGGTGCTCGGGGGGCTCATGATGCTGCTGGCTCGCCTGGGCCGCGGGCAGCAGTTCCCATTCGGGCCGTATCTTGC
CGGCGCAGGCGCGGTGGTGCTGTTCTACGGGCCTGCCATCAACGCCTGGTACCTCGGCCTGCTCGCGCGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.408	97.931	0.503
pilD	Vibrio campbellii strain DS40M4	50.704	97.931	0.497
pilD	Acinetobacter baumannii D1279779	47.955	92.759	0.445
pilD	Neisseria gonorrhoeae MS11	46.182	94.828	0.438
pilD	Acinetobacter nosocomialis M2	47.212	92.759	0.438