Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | L1F34_RS06690 | Genome accession | NZ_CP180174 |
| Coordinates | 1343895..1344212 (+) | Length | 105 a.a. |
| NCBI ID | WP_070045385.1 | Uniprot ID | A0AAX3W128 |
| Organism | Mammaliicoccus lentus strain B3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1338895..1349212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1F34_RS06650 (L1F34_001291) | - | 1339011..1339202 (+) | 192 | WP_017000229.1 | YqgQ family protein | - |
| L1F34_RS06655 (L1F34_001292) | - | 1339199..1340170 (+) | 972 | WP_017000230.1 | ROK family glucokinase | - |
| L1F34_RS06660 (L1F34_001293) | - | 1340170..1340484 (+) | 315 | WP_017000231.1 | MTH1187 family thiamine-binding protein | - |
| L1F34_RS06665 (L1F34_001294) | - | 1340513..1340752 (-) | 240 | WP_017000232.1 | DUF2759 domain-containing protein | - |
| L1F34_RS06670 (L1F34_001295) | - | 1340850..1341482 (+) | 633 | WP_415364570.1 | MBL fold metallo-hydrolase | - |
| L1F34_RS06675 (L1F34_001296) | - | 1341547..1341795 (-) | 249 | WP_017000234.1 | DUF2626 family protein | - |
| L1F34_RS06680 (L1F34_001297) | comGA | 1341948..1342844 (+) | 897 | WP_415364572.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| L1F34_RS06685 (L1F34_001298) | comGB | 1342841..1343881 (+) | 1041 | WP_415364574.1 | competence type IV pilus assembly protein ComGB | - |
| L1F34_RS06690 (L1F34_001299) | comGC | 1343895..1344212 (+) | 318 | WP_070045385.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| L1F34_RS06695 (L1F34_001300) | comGD | 1344212..1344640 (+) | 429 | WP_017000239.1 | competence type IV pilus minor pilin ComGD | - |
| L1F34_RS06700 (L1F34_001301) | comGE | 1344627..1344899 (+) | 273 | WP_228082628.1 | competence type IV pilus minor pilin ComGE | - |
| L1F34_RS06705 (L1F34_001302) | comGF | 1344913..1345308 (+) | 396 | WP_237687866.1 | competence type IV pilus minor pilin ComGF | - |
| L1F34_RS06710 (L1F34_001303) | - | 1345544..1346062 (+) | 519 | WP_064205405.1 | shikimate kinase | - |
| L1F34_RS06715 (L1F34_001304) | gcvT | 1346225..1347313 (+) | 1089 | WP_135031055.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| L1F34_RS06720 (L1F34_001305) | gcvPA | 1347325..1348668 (+) | 1344 | WP_064205406.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11590.66 Da Isoelectric Point: 7.8266
>NTDB_id=1094223 L1F34_RS06690 WP_070045385.1 1343895..1344212(+) (comGC) [Mammaliicoccus lentus strain B3]
MKNIKFFKKEEGFTLIEMLIVLLIISILLIIIIPNISKQSETVKSTGCQAQVKMVAGQVEAYTLKHDAKPNSINDLVSDG
FIKENQLTCKSGQNIVLNNGEVVAQ
MKNIKFFKKEEGFTLIEMLIVLLIISILLIIIIPNISKQSETVKSTGCQAQVKMVAGQVEAYTLKHDAKPNSINDLVSDG
FIKENQLTCKSGQNIVLNNGEVVAQ
Nucleotide
Download Length: 318 bp
>NTDB_id=1094223 L1F34_RS06690 WP_070045385.1 1343895..1344212(+) (comGC) [Mammaliicoccus lentus strain B3]
ATGAAAAATATAAAGTTTTTTAAAAAAGAAGAAGGCTTCACGTTGATTGAGATGTTAATCGTATTATTAATTATAAGTAT
TTTACTTATAATTATAATCCCTAACATAAGCAAGCAGTCTGAAACCGTGAAAAGTACTGGTTGTCAGGCACAAGTTAAAA
TGGTTGCTGGCCAAGTAGAAGCATATACATTAAAACACGATGCTAAGCCAAATTCAATTAATGATTTAGTAAGTGATGGG
TTCATAAAAGAGAATCAATTGACTTGTAAATCTGGTCAGAACATTGTTTTAAATAACGGAGAAGTAGTAGCTCAATAA
ATGAAAAATATAAAGTTTTTTAAAAAAGAAGAAGGCTTCACGTTGATTGAGATGTTAATCGTATTATTAATTATAAGTAT
TTTACTTATAATTATAATCCCTAACATAAGCAAGCAGTCTGAAACCGTGAAAAGTACTGGTTGTCAGGCACAAGTTAAAA
TGGTTGCTGGCCAAGTAGAAGCATATACATTAAAACACGATGCTAAGCCAAATTCAATTAATGATTTAGTAAGTGATGGG
TTCATAAAAGAGAATCAATTGACTTGTAAATCTGGTCAGAACATTGTTTTAAATAACGGAGAAGTAGTAGCTCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
66.337 |
96.19 |
0.638 |
| comGC | Staphylococcus aureus N315 |
66.337 |
96.19 |
0.638 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.237 |
88.571 |
0.41 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
40.952 |
100 |
0.41 |
| comGC/cglC | Streptococcus mitis SK321 |
43.299 |
92.381 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.828 |
82.857 |
0.371 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.828 |
82.857 |
0.371 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.828 |
82.857 |
0.371 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.828 |
82.857 |
0.371 |
| comYC | Streptococcus mutans UA159 |
50.649 |
73.333 |
0.371 |
| comYC | Streptococcus mutans UA140 |
50.649 |
73.333 |
0.371 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
46.341 |
78.095 |
0.362 |