Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | L1F34_RS06680 | Genome accession | NZ_CP180174 |
| Coordinates | 1341948..1342844 (+) | Length | 298 a.a. |
| NCBI ID | WP_415364572.1 | Uniprot ID | - |
| Organism | Mammaliicoccus lentus strain B3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1336948..1347844
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1F34_RS06640 (L1F34_001289) | - | 1337005..1337559 (+) | 555 | WP_064204534.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| L1F34_RS06645 (L1F34_001290) | - | 1337560..1339008 (+) | 1449 | WP_194201285.1 | rhomboid family intramembrane serine protease | - |
| L1F34_RS06650 (L1F34_001291) | - | 1339011..1339202 (+) | 192 | WP_017000229.1 | YqgQ family protein | - |
| L1F34_RS06655 (L1F34_001292) | - | 1339199..1340170 (+) | 972 | WP_017000230.1 | ROK family glucokinase | - |
| L1F34_RS06660 (L1F34_001293) | - | 1340170..1340484 (+) | 315 | WP_017000231.1 | MTH1187 family thiamine-binding protein | - |
| L1F34_RS06665 (L1F34_001294) | - | 1340513..1340752 (-) | 240 | WP_017000232.1 | DUF2759 domain-containing protein | - |
| L1F34_RS06670 (L1F34_001295) | - | 1340850..1341482 (+) | 633 | WP_415364570.1 | MBL fold metallo-hydrolase | - |
| L1F34_RS06675 (L1F34_001296) | - | 1341547..1341795 (-) | 249 | WP_017000234.1 | DUF2626 family protein | - |
| L1F34_RS06680 (L1F34_001297) | comGA | 1341948..1342844 (+) | 897 | WP_415364572.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| L1F34_RS06685 (L1F34_001298) | comGB | 1342841..1343881 (+) | 1041 | WP_415364574.1 | competence type IV pilus assembly protein ComGB | - |
| L1F34_RS06690 (L1F34_001299) | comGC | 1343895..1344212 (+) | 318 | WP_070045385.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| L1F34_RS06695 (L1F34_001300) | comGD | 1344212..1344640 (+) | 429 | WP_017000239.1 | competence type IV pilus minor pilin ComGD | - |
| L1F34_RS06700 (L1F34_001301) | comGE | 1344627..1344899 (+) | 273 | WP_228082628.1 | competence type IV pilus minor pilin ComGE | - |
| L1F34_RS06705 (L1F34_001302) | comGF | 1344913..1345308 (+) | 396 | WP_237687866.1 | competence type IV pilus minor pilin ComGF | - |
| L1F34_RS06710 (L1F34_001303) | - | 1345544..1346062 (+) | 519 | WP_064205405.1 | shikimate kinase | - |
| L1F34_RS06715 (L1F34_001304) | gcvT | 1346225..1347313 (+) | 1089 | WP_135031055.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 298 a.a. Molecular weight: 34452.64 Da Isoelectric Point: 6.0970
>NTDB_id=1094222 L1F34_RS06680 WP_415364572.1 1341948..1342844(+) (comGA) [Mammaliicoccus lentus strain B3]
METLFKTIIKDAIILKATDIHFIPVKEDRVKVQLRISGENTIYDCNINNALYNRLLIYMKFIAHLDVSERNKAQSGQYIF
DDIYKYYLRISTLPLSLGIESCSIRLTPKYFEEYIDHNIDDNYKMIKEEMFNSEGLFLFTGPTGSGKSTIMYQFLYDLQQ
IKDKHIITIEDPVEQVLDGVVQVSVNEKANINYHNSFKAILRCDPDVVMIGEIRDEETAKQVIQASLSGHLILSTMHAKD
NLGAIYRLLELGISKEQIKQGIACIANQRLLNDQLGNRYRQMTYIFSHEINLYLENKS
METLFKTIIKDAIILKATDIHFIPVKEDRVKVQLRISGENTIYDCNINNALYNRLLIYMKFIAHLDVSERNKAQSGQYIF
DDIYKYYLRISTLPLSLGIESCSIRLTPKYFEEYIDHNIDDNYKMIKEEMFNSEGLFLFTGPTGSGKSTIMYQFLYDLQQ
IKDKHIITIEDPVEQVLDGVVQVSVNEKANINYHNSFKAILRCDPDVVMIGEIRDEETAKQVIQASLSGHLILSTMHAKD
NLGAIYRLLELGISKEQIKQGIACIANQRLLNDQLGNRYRQMTYIFSHEINLYLENKS
Nucleotide
Download Length: 897 bp
>NTDB_id=1094222 L1F34_RS06680 WP_415364572.1 1341948..1342844(+) (comGA) [Mammaliicoccus lentus strain B3]
ATGGAAACTTTATTTAAGACAATTATCAAAGATGCTATTATTTTGAAAGCAACTGACATTCATTTTATTCCAGTGAAAGA
AGATCGGGTCAAAGTTCAGTTGAGGATAAGTGGTGAGAATACGATTTATGATTGTAATATTAATAACGCTTTATATAACC
GTTTATTAATTTATATGAAGTTTATTGCTCATCTAGATGTAAGTGAAAGGAATAAAGCTCAAAGTGGTCAATATATATTT
GATGATATATATAAATATTATTTAAGAATATCCACTTTACCTTTAAGTCTAGGAATTGAGTCTTGCTCAATTAGGTTAAC
GCCTAAATATTTCGAAGAATATATTGACCATAATATTGATGACAATTATAAAATGATTAAAGAAGAAATGTTTAATTCCG
AAGGCTTATTTTTGTTCACAGGACCAACCGGTTCGGGTAAATCGACGATTATGTACCAATTTTTATATGACTTACAACAA
ATTAAAGATAAACATATTATTACGATTGAAGACCCAGTTGAACAAGTTTTAGATGGTGTAGTACAAGTTTCTGTAAATGA
AAAAGCAAACATAAATTATCATAATTCTTTTAAAGCCATTTTAAGATGTGATCCAGATGTTGTCATGATAGGAGAAATTA
GAGATGAAGAAACAGCCAAGCAAGTTATACAAGCAAGTCTAAGTGGTCATTTAATATTATCTACAATGCATGCTAAAGAT
AATTTAGGGGCTATTTATAGACTTTTAGAACTTGGAATATCTAAAGAGCAAATAAAACAAGGTATCGCATGTATAGCCAA
TCAAAGACTTTTAAATGACCAACTAGGAAATAGATATAGACAAATGACTTATATATTTAGTCATGAAATTAATCTATATT
TAGAAAATAAATCATGA
ATGGAAACTTTATTTAAGACAATTATCAAAGATGCTATTATTTTGAAAGCAACTGACATTCATTTTATTCCAGTGAAAGA
AGATCGGGTCAAAGTTCAGTTGAGGATAAGTGGTGAGAATACGATTTATGATTGTAATATTAATAACGCTTTATATAACC
GTTTATTAATTTATATGAAGTTTATTGCTCATCTAGATGTAAGTGAAAGGAATAAAGCTCAAAGTGGTCAATATATATTT
GATGATATATATAAATATTATTTAAGAATATCCACTTTACCTTTAAGTCTAGGAATTGAGTCTTGCTCAATTAGGTTAAC
GCCTAAATATTTCGAAGAATATATTGACCATAATATTGATGACAATTATAAAATGATTAAAGAAGAAATGTTTAATTCCG
AAGGCTTATTTTTGTTCACAGGACCAACCGGTTCGGGTAAATCGACGATTATGTACCAATTTTTATATGACTTACAACAA
ATTAAAGATAAACATATTATTACGATTGAAGACCCAGTTGAACAAGTTTTAGATGGTGTAGTACAAGTTTCTGTAAATGA
AAAAGCAAACATAAATTATCATAATTCTTTTAAAGCCATTTTAAGATGTGATCCAGATGTTGTCATGATAGGAGAAATTA
GAGATGAAGAAACAGCCAAGCAAGTTATACAAGCAAGTCTAAGTGGTCATTTAATATTATCTACAATGCATGCTAAAGAT
AATTTAGGGGCTATTTATAGACTTTTAGAACTTGGAATATCTAAAGAGCAAATAAAACAAGGTATCGCATGTATAGCCAA
TCAAAGACTTTTAAATGACCAACTAGGAAATAGATATAGACAAATGACTTATATATTTAGTCATGAAATTAATCTATATT
TAGAAAATAAATCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
50.993 |
100 |
0.517 |
| comGA | Staphylococcus aureus N315 |
50.993 |
100 |
0.517 |