Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMHYC_RS17365 Genome accession   NZ_CP180027
Coordinates   3660157..3661383 (+) Length   408 a.a.
NCBI ID   WP_004774089.1    Uniprot ID   N9Q9Z3
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3655157..3666383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS17330 (ACMHYC_17330) rimP 3655763..3656287 (-) 525 WP_199949764.1 ribosome maturation factor RimP -
  ACMHYC_RS17350 (ACMHYC_17350) secG 3656915..3657244 (-) 330 WP_032870579.1 preprotein translocase subunit SecG -
  ACMHYC_RS17355 (ACMHYC_17355) tpiA 3657257..3658048 (-) 792 WP_199949763.1 triose-phosphate isomerase -
  ACMHYC_RS17360 (ACMHYC_17360) pilB 3658420..3660132 (+) 1713 WP_032875426.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMHYC_RS17365 (ACMHYC_17365) pilC 3660157..3661383 (+) 1227 WP_004774089.1 type II secretion system F family protein Machinery gene
  ACMHYC_RS17370 (ACMHYC_17370) pilD 3661389..3662249 (+) 861 WP_199949762.1 prepilin peptidase Machinery gene
  ACMHYC_RS17375 (ACMHYC_17375) coaE 3662251..3662856 (+) 606 WP_199949761.1 dephospho-CoA kinase -
  ACMHYC_RS17380 (ACMHYC_17380) - 3662826..3663764 (-) 939 WP_199949760.1 DMT family transporter -
  ACMHYC_RS17385 (ACMHYC_17385) rlmB 3663796..3664542 (-) 747 WP_004774084.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACMHYC_RS17390 (ACMHYC_17390) - 3664738..3665064 (-) 327 WP_004774082.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44936.44 Da        Isoelectric Point: 9.8806

>NTDB_id=1094105 ACMHYC_RS17365 WP_004774089.1 3660157..3661383(+) (pilC) [Acinetobacter courvalinii isolate 2024CK-01798]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSKWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDLLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1094105 ACMHYC_RS17365 WP_004774089.1 3660157..3661383(+) (pilC) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGGCAGCTAAAAAAGCGCAAATGATGCCAACTTTTGCTTATGAAGGGGTTGACCGGAAAGGGGCAAAAATTAAAGGGGA
ATTACCGGCACGTAATATGGCTTTGGCGAAAGTCACCTTACGTAAACAAGGGGTCACCATTAAGAATATTCGGGAAAAAC
GCAAGAATATTCTTGAAGGTTTAATGAAGAAAAAGGTGACCACGCTGGATATCACGATTTTTACCCGCCAATTGGCCACC
ATGATGAAAGCGGGTGTGCCACTGGTACAGGGCTTTGAAATCGTGGCCGAAGGTTTGGAAAATCCCTCTATGCGTGAAGT
GGTGTTGGGGATCAAGGGTGAAGTTGAAGGCGGTAATACCTTTGCCGGTGCCCTAAAAAAGTATCCGCAATATTTTGATA
ACCTGTTCTGCTCGCTGGTGGAGTCGGGTGAACAATCAGGTGCGCTGGAAACCATGTTAGACCGCGTTGCGATCTACAAA
GAAAAAAGCGAGCTGCTCAAGCAGAAAATTAAAAAGGCCATGAAATACCCGGCTACGGTGATTGTGGTAGCTGTGATTGT
GACCATTATCCTGATGGTGAAAGTGGTACCGGTATTTCAGGACCTGTTCAGTTCTTTTGGCGCAGACCTTCCGGCATTCA
CCAAAATGGTGGTGAACATGTCCAAGTGGATGCAAGAGTACTGGTTTATCCTGATTATCGTGATTGGTGCCATTATTGCT
GCCTTTCTGGAAGCGAAAAAGCGCAGCAAGAAATTCCGCGATCTGCTCGATAAAATGGCTTTGAAAGCGCCTATTTTTGG
CGATCTGGTTTATAAAGCCATTATTGCGCGCTATAGCCGTACCTTGGCCACGACGTTTGCCGCAGGTGTCCCACTGATTG
ATGCATTAGAATCAACGGCGGGAGCCACCAATAACGTGATTTATGAAGAAGCGGTCATGAAAATCCGCGAAGATGTTGCC
ACAGGTCAGCAACTGCAGTTCGCCATGCGTGTTTCGAACCGCTTCCCTTCAATGGCGATTCAAATGGTCGCGATTGGTGA
GGAGTCTGGTGCTTTAGATAGCATGCTGGATAAGGTTGCCACCCATTATGAAAATGAAGTCGACAATGCCGTAGATGGTT
TAACCTCTATGATGGAACCGCTGATCATGGCTATACTGGGTATTTTAGTCGGTGGTCTGGTTGTTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9Q9Z3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

93.627

100

0.936
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.51

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404

Multiple sequence alignment