Detailed information NTG1094106

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMHYC_RS17370
• Genome accession: NZ_CP180027
• Coordinates: 3661389..3662249 (+)
• Length: 286 a.a.
• NCBI ID: WP_199949762.1
• Uniprot ID: -
• Organism: Acinetobacter courvalinii isolate 2024CK-01798
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3656389..3667249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMHYC_RS17350 (ACMHYC_17350)	secG	3656915..3657244 (-)	330	WP_032870579.1	preprotein translocase subunit SecG	-
ACMHYC_RS17355 (ACMHYC_17355)	tpiA	3657257..3658048 (-)	792	WP_199949763.1	triose-phosphate isomerase	-
ACMHYC_RS17360 (ACMHYC_17360)	pilB	3658420..3660132 (+)	1713	WP_032875426.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACMHYC_RS17365 (ACMHYC_17365)	pilC	3660157..3661383 (+)	1227	WP_004774089.1	type II secretion system F family protein	Machinery gene
ACMHYC_RS17370 (ACMHYC_17370)	pilD	3661389..3662249 (+)	861	WP_199949762.1	prepilin peptidase	Machinery gene
ACMHYC_RS17375 (ACMHYC_17375)	coaE	3662251..3662856 (+)	606	WP_199949761.1	dephospho-CoA kinase	-
ACMHYC_RS17380 (ACMHYC_17380)	-	3662826..3663764 (-)	939	WP_199949760.1	DMT family transporter	-
ACMHYC_RS17385 (ACMHYC_17385)	rlmB	3663796..3664542 (-)	747	WP_004774084.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACMHYC_RS17390 (ACMHYC_17390)	-	3664738..3665064 (-)	327	WP_004774082.1	pyrimidine/purine nucleoside phosphorylase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32018.46 Da
• Isoelectric Point: 6.8228

>NTDB_id=1094106 ACMHYC_RS17370 WP_199949762.1 3661389..3662249(+) (pilD) [Acinetobacter courvalinii isolate 2024CK-01798]
MQQMINYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPKMMEQEWQQECQMLLHPEQPIIDQSKLTLSQPASTCPKCDAP
IRWYQNIPVISWLVLRGKCGSCQNPISIRYPLIELLTMLCSLVVVAVYGPTLQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINSYAIYTSASLAIWGYIIGFLCLWIVYYIFKLITGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSM
VGAIIGIILMKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1094106 ACMHYC_RS17370 WP_199949762.1 3661389..3662249(+) (pilD) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGCAACAAATGATTAATTATTTTATTGAAAACCCGACTGCACTGTATCTTGCGGTTGGGCTTTTTAGTTTATGTATCGG
CAGCTTTTTAAATGTGGTCATCTTCCGCACACCCAAGATGATGGAACAAGAGTGGCAGCAGGAATGCCAGATGCTCCTGC
ATCCTGAACAGCCGATAATTGACCAAAGTAAACTGACACTGAGTCAACCCGCTTCGACTTGTCCCAAGTGTGACGCGCCT
ATTCGCTGGTACCAGAATATTCCTGTGATTAGCTGGTTAGTCCTGCGGGGTAAATGTGGCAGCTGCCAGAATCCGATCAG
TATCCGTTATCCGCTGATTGAACTATTGACCATGCTGTGCTCGCTGGTGGTCGTTGCGGTCTATGGCCCAACCCTACAAA
TGCTGTTCGGTTTAGTGCTGACCTGGGTTTTGATCACACTGACTTTTATTGATTTTGATACCCAATTGCTACCCGATCGC
TTTACCCTTCCCCTCGCTGCCTTAGGTTTAGGAATTAATAGTTATGCCATTTATACCTCGGCCAGTCTGGCAATCTGGGG
CTATATCATTGGCTTCCTGTGTCTCTGGATCGTGTATTACATTTTCAAATTAATCACCGGTAAAGAAGGCATGGGCTATG
GCGACTTTAAACTGTTAGCCGCCTTAGGTGCATGGATGGGGCCAATGCTGCTGCCTTTAATTGTGCTACTCTCTTCAATG
GTCGGTGCGATTATTGGTATTATTTTGATGAAAATGCGTGGTGAAAATCAGCCATTTGCATTTGGTCCTTATATTGCAAT
TGCAGGCTGGATCGCCTTTTTATGGGGTGATCAAATCATGAAAGTTTATTTAGGTGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	83.916	100	0.839
pilD	Acinetobacter nosocomialis M2	83.916	100	0.839
pilD	Vibrio cholerae strain A1552	54.851	93.706	0.514
pilD	Vibrio campbellii strain DS40M4	52.434	93.357	0.49
pilD	Neisseria gonorrhoeae MS11	46.429	97.902	0.455