Detailed information
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACMGRF_RS02995 | Genome accession | NZ_CP179923 |
| Coordinates | 658055..659149 (+) | Length | 364 a.a. |
| NCBI ID | WP_049411044.1 | Uniprot ID | - |
| Organism | Stenotrophomonas sp. EMP41 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 653055..664149
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMGRF_RS02965 (ACMGRF_02965) | soxR | 653128..653562 (+) | 435 | WP_005415534.1 | redox-sensitive transcriptional activator SoxR | - |
| ACMGRF_RS02970 (ACMGRF_02970) | - | 653629..654231 (-) | 603 | WP_180879914.1 | short chain dehydrogenase | - |
| ACMGRF_RS02975 (ACMGRF_02975) | - | 654330..655205 (+) | 876 | WP_111190667.1 | LysR family transcriptional regulator | - |
| ACMGRF_RS02980 (ACMGRF_02980) | proC | 655266..656087 (-) | 822 | WP_049411030.1 | pyrroline-5-carboxylate reductase | - |
| ACMGRF_RS02985 (ACMGRF_02985) | - | 656106..656783 (-) | 678 | WP_049411034.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACMGRF_RS02990 (ACMGRF_02990) | pilT | 656871..657908 (+) | 1038 | WP_004147099.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACMGRF_RS02995 (ACMGRF_02995) | pilU | 658055..659149 (+) | 1095 | WP_049411044.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACMGRF_RS03000 (ACMGRF_03000) | - | 659185..659913 (+) | 729 | WP_049411036.1 | hypothetical protein | - |
| ACMGRF_RS03005 (ACMGRF_03005) | - | 660025..661008 (+) | 984 | WP_099494701.1 | aldo/keto reductase | - |
| ACMGRF_RS03010 (ACMGRF_03010) | - | 661071..661967 (-) | 897 | WP_049411042.1 | LysR family transcriptional regulator | - |
| ACMGRF_RS03015 (ACMGRF_03015) | - | 662453..662665 (+) | 213 | WP_049410655.1 | DUF4287 domain-containing protein | - |
| ACMGRF_RS03020 (ACMGRF_03020) | - | 662777..663484 (+) | 708 | WP_005415543.1 | YitT family protein | - |
| ACMGRF_RS03025 (ACMGRF_03025) | - | 663545..664090 (-) | 546 | WP_049410652.1 | DNA-3-methyladenine glycosylase I | - |
Sequence
Protein
Download Length: 364 a.a. Molecular weight: 40537.55 Da Isoelectric Point: 6.7715
>NTDB_id=1093857 ACMGRF_RS02995 WP_049411044.1 658055..659149(+) (pilU) [Stenotrophomonas sp. EMP41]
MAHQRASDLFITAGMPPAMKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFAIGLSGVGRFRVSCFYQR
NQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGYRNQNSTGHIITIEDPIEFVHKHE
GCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLATLHANNANQAMDRIVNFFPEDRR
NQLLMDLSLNLKGVVAQQLVPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKEVMKDSVQLGMKTFDQSLFELYQAGE
ISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEIR
MAHQRASDLFITAGMPPAMKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFAIGLSGVGRFRVSCFYQR
NQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGYRNQNSTGHIITIEDPIEFVHKHE
GCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLATLHANNANQAMDRIVNFFPEDRR
NQLLMDLSLNLKGVVAQQLVPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKEVMKDSVQLGMKTFDQSLFELYQAGE
ISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEIR
Nucleotide
Download Length: 1095 bp
>NTDB_id=1093857 ACMGRF_RS02995 WP_049411044.1 658055..659149(+) (pilU) [Stenotrophomonas sp. EMP41]
ATGGCGCACCAGCGCGCCTCGGACCTGTTCATCACTGCGGGTATGCCACCGGCGATGAAGGTCAACGGCAAGATCTCGCC
GATCACGCAGACGCCACTGACGCCGCAGCAGAGCCGCGACCTGGTCCTCAACGTGATGACCCCGGCACAGCGCGAGGAAT
TCGAAAAGACCCACGAATGCAACTTCGCCATCGGCCTGTCCGGTGTCGGCCGTTTCCGCGTGAGCTGCTTCTACCAGCGC
AACCAGGTCGGCATGGTGCTGCGTCGCATCGAGACGCGCATTCCGACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAA
GACGCTGGCGATGACCAAGCGCGGCATCATCCTGTTCGTCGGTGCCACCGGTACCGGTAAATCGACTTCGCTGGCGGCGA
TGATCGGTTACCGCAACCAAAACTCGACCGGGCACATCATCACCATCGAAGACCCGATCGAATTCGTGCACAAGCACGAG
GGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGC
GCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAAGGCATGGACCACGCCATCGCGTTCGCCGAAACCGGCCACC
TGGTGCTGGCCACGCTGCATGCCAACAATGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGACCGCCGC
AACCAGCTGTTGATGGACCTGTCGCTGAACCTCAAGGGGGTGGTCGCGCAGCAGCTGGTGCCGTCGCCCGATGGCCGCTC
GCGCAAGGTGGCGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGA
AGGAAGTGATGAAGGACTCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTCTACCAGGCCGGCGAG
ATCAGCTACGAGGACGCGCTGCGCTACGCCGATTCGCAGAACGAGGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGA
CGCGCGCACCCTGTCGCAGGGACTGGATGGCGTGGAGATCTCGGAGATCCGTTGA
ATGGCGCACCAGCGCGCCTCGGACCTGTTCATCACTGCGGGTATGCCACCGGCGATGAAGGTCAACGGCAAGATCTCGCC
GATCACGCAGACGCCACTGACGCCGCAGCAGAGCCGCGACCTGGTCCTCAACGTGATGACCCCGGCACAGCGCGAGGAAT
TCGAAAAGACCCACGAATGCAACTTCGCCATCGGCCTGTCCGGTGTCGGCCGTTTCCGCGTGAGCTGCTTCTACCAGCGC
AACCAGGTCGGCATGGTGCTGCGTCGCATCGAGACGCGCATTCCGACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAA
GACGCTGGCGATGACCAAGCGCGGCATCATCCTGTTCGTCGGTGCCACCGGTACCGGTAAATCGACTTCGCTGGCGGCGA
TGATCGGTTACCGCAACCAAAACTCGACCGGGCACATCATCACCATCGAAGACCCGATCGAATTCGTGCACAAGCACGAG
GGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGC
GCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAAGGCATGGACCACGCCATCGCGTTCGCCGAAACCGGCCACC
TGGTGCTGGCCACGCTGCATGCCAACAATGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGACCGCCGC
AACCAGCTGTTGATGGACCTGTCGCTGAACCTCAAGGGGGTGGTCGCGCAGCAGCTGGTGCCGTCGCCCGATGGCCGCTC
GCGCAAGGTGGCGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGA
AGGAAGTGATGAAGGACTCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTCTACCAGGCCGGCGAG
ATCAGCTACGAGGACGCGCTGCGCTACGCCGATTCGCAGAACGAGGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGA
CGCGCGCACCCTGTCGCAGGGACTGGATGGCGTGGAGATCTCGGAGATCCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
68.994 |
98.352 |
0.679 |
| pilU | Acinetobacter baylyi ADP1 |
64.368 |
95.604 |
0.615 |
| pilU | Vibrio cholerae strain A1552 |
54.755 |
95.33 |
0.522 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.899 |
94.78 |
0.407 |
| pilT | Acinetobacter baumannii strain A118 |
40.303 |
90.659 |
0.365 |
| pilT | Acinetobacter nosocomialis M2 |
40.303 |
90.659 |
0.365 |
| pilT | Acinetobacter baumannii D1279779 |
40.303 |
90.659 |
0.365 |
| pilT | Pseudomonas aeruginosa PAK |
40.615 |
89.286 |
0.363 |