Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilU   Type   Machinery gene
Locus tag   ACMGRF_RS02995 Genome accession   NZ_CP179923
Coordinates   658055..659149 (+) Length   364 a.a.
NCBI ID   WP_049411044.1    Uniprot ID   -
Organism   Stenotrophomonas sp. EMP41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 653055..664149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGRF_RS02965 (ACMGRF_02965) soxR 653128..653562 (+) 435 WP_005415534.1 redox-sensitive transcriptional activator SoxR -
  ACMGRF_RS02970 (ACMGRF_02970) - 653629..654231 (-) 603 WP_180879914.1 short chain dehydrogenase -
  ACMGRF_RS02975 (ACMGRF_02975) - 654330..655205 (+) 876 WP_111190667.1 LysR family transcriptional regulator -
  ACMGRF_RS02980 (ACMGRF_02980) proC 655266..656087 (-) 822 WP_049411030.1 pyrroline-5-carboxylate reductase -
  ACMGRF_RS02985 (ACMGRF_02985) - 656106..656783 (-) 678 WP_049411034.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACMGRF_RS02990 (ACMGRF_02990) pilT 656871..657908 (+) 1038 WP_004147099.1 type IV pilus twitching motility protein PilT Machinery gene
  ACMGRF_RS02995 (ACMGRF_02995) pilU 658055..659149 (+) 1095 WP_049411044.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACMGRF_RS03000 (ACMGRF_03000) - 659185..659913 (+) 729 WP_049411036.1 hypothetical protein -
  ACMGRF_RS03005 (ACMGRF_03005) - 660025..661008 (+) 984 WP_099494701.1 aldo/keto reductase -
  ACMGRF_RS03010 (ACMGRF_03010) - 661071..661967 (-) 897 WP_049411042.1 LysR family transcriptional regulator -
  ACMGRF_RS03015 (ACMGRF_03015) - 662453..662665 (+) 213 WP_049410655.1 DUF4287 domain-containing protein -
  ACMGRF_RS03020 (ACMGRF_03020) - 662777..663484 (+) 708 WP_005415543.1 YitT family protein -
  ACMGRF_RS03025 (ACMGRF_03025) - 663545..664090 (-) 546 WP_049410652.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 364 a.a.        Molecular weight: 40537.55 Da        Isoelectric Point: 6.7715

>NTDB_id=1093857 ACMGRF_RS02995 WP_049411044.1 658055..659149(+) (pilU) [Stenotrophomonas sp. EMP41]
MAHQRASDLFITAGMPPAMKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFAIGLSGVGRFRVSCFYQR
NQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGYRNQNSTGHIITIEDPIEFVHKHE
GCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLATLHANNANQAMDRIVNFFPEDRR
NQLLMDLSLNLKGVVAQQLVPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKEVMKDSVQLGMKTFDQSLFELYQAGE
ISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEIR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=1093857 ACMGRF_RS02995 WP_049411044.1 658055..659149(+) (pilU) [Stenotrophomonas sp. EMP41]
ATGGCGCACCAGCGCGCCTCGGACCTGTTCATCACTGCGGGTATGCCACCGGCGATGAAGGTCAACGGCAAGATCTCGCC
GATCACGCAGACGCCACTGACGCCGCAGCAGAGCCGCGACCTGGTCCTCAACGTGATGACCCCGGCACAGCGCGAGGAAT
TCGAAAAGACCCACGAATGCAACTTCGCCATCGGCCTGTCCGGTGTCGGCCGTTTCCGCGTGAGCTGCTTCTACCAGCGC
AACCAGGTCGGCATGGTGCTGCGTCGCATCGAGACGCGCATTCCGACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAA
GACGCTGGCGATGACCAAGCGCGGCATCATCCTGTTCGTCGGTGCCACCGGTACCGGTAAATCGACTTCGCTGGCGGCGA
TGATCGGTTACCGCAACCAAAACTCGACCGGGCACATCATCACCATCGAAGACCCGATCGAATTCGTGCACAAGCACGAG
GGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGC
GCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAAGGCATGGACCACGCCATCGCGTTCGCCGAAACCGGCCACC
TGGTGCTGGCCACGCTGCATGCCAACAATGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGACCGCCGC
AACCAGCTGTTGATGGACCTGTCGCTGAACCTCAAGGGGGTGGTCGCGCAGCAGCTGGTGCCGTCGCCCGATGGCCGCTC
GCGCAAGGTGGCGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGA
AGGAAGTGATGAAGGACTCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTCTACCAGGCCGGCGAG
ATCAGCTACGAGGACGCGCTGCGCTACGCCGATTCGCAGAACGAGGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGA
CGCGCGCACCCTGTCGCAGGGACTGGATGGCGTGGAGATCTCGGAGATCCGTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

68.994

98.352

0.679

  pilU Acinetobacter baylyi ADP1

64.368

95.604

0.615

  pilU Vibrio cholerae strain A1552

54.755

95.33

0.522

  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.899

94.78

0.407

  pilT Acinetobacter baumannii strain A118

40.303

90.659

0.365

  pilT Acinetobacter nosocomialis M2

40.303

90.659

0.365

  pilT Acinetobacter baumannii D1279779

40.303

90.659

0.365

  pilT Pseudomonas aeruginosa PAK

40.615

89.286

0.363


Multiple sequence alignment