Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMGG8_RS08615 Genome accession   NZ_CP179909
Coordinates   1857370..1858587 (-) Length   405 a.a.
NCBI ID   WP_414159452.1    Uniprot ID   -
Organism   Pseudomonas sp. BNK-45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1852370..1863587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGG8_RS08575 (ACMGG8_08575) - 1853085..1853258 (-) 174 WP_060841145.1 DUF3094 family protein -
  ACMGG8_RS08580 (ACMGG8_08580) - 1853447..1854076 (-) 630 WP_060841144.1 DUF1780 domain-containing protein -
  ACMGG8_RS08585 (ACMGG8_08585) - 1854223..1854690 (+) 468 WP_414159450.1 FAD/FMN-containing dehydrogenase -
  ACMGG8_RS08590 (ACMGG8_08590) - 1854687..1855376 (+) 690 WP_016968160.1 energy-coupling factor ABC transporter permease -
  ACMGG8_RS08595 (ACMGG8_08595) - 1855440..1855655 (+) 216 WP_016968161.1 hypothetical protein -
  ACMGG8_RS08600 (ACMGG8_08600) yacG 1855675..1855878 (-) 204 WP_060841142.1 DNA gyrase inhibitor YacG -
  ACMGG8_RS08605 (ACMGG8_08605) coaE 1855875..1856498 (-) 624 WP_060841141.1 dephospho-CoA kinase -
  ACMGG8_RS08610 (ACMGG8_08610) pilD 1856495..1857367 (-) 873 WP_414159451.1 prepilin peptidase Machinery gene
  ACMGG8_RS08615 (ACMGG8_08615) pilC 1857370..1858587 (-) 1218 WP_414159452.1 type II secretion system F family protein Machinery gene
  ACMGG8_RS08620 (ACMGG8_08620) - 1858909..1859325 (+) 417 WP_060841138.1 pilin -
  ACMGG8_RS08625 (ACMGG8_08625) - 1859568..1859924 (+) 357 WP_060841137.1 BON domain-containing protein -
  ACMGG8_RS08630 (ACMGG8_08630) - 1860114..1863032 (-) 2919 WP_414159453.1 DUF748 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43919.57 Da        Isoelectric Point: 10.5686

>NTDB_id=1093801 ACMGG8_RS08615 WP_414159452.1 1857370..1858587(-) (pilC) [Pseudomonas sp. BNK-45]
MAAKAPTTSVYLWHGIDGQGQVMHGELSAANPGLIRARLRKQGITPTRVRRKPRAWPRLGQGISPREIALFTRQLATLMQ
AGVPLLQAFDIIAEGFEQPLMRQLLASLKREIEAGSSLASALRRHPRHFDALYCNLVDAGEQAGALDTLLERVATHKEKS
ENLKTRVKQAMVYPLAVIGVAVVVSSILLLKVVPQFQSLFAGFDAELPPLTQWVINLSQVLQRHGGLLLAASLLVGVGLI
QAYRRSARLRDTVDVGLLRLPLAGPLLQKSAVARYARILATTFAAGVPLVQALDSVAGTSGNRVFKQAVERIRQQVASGM
QLHFAMRASGVFPGMAVQMTAIGEESGTLDHLLEKVATHYEVEVDHLVDSLTRLMEPLIMVLLGSIVGALVVAMYLPVFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1093801 ACMGG8_RS08615 WP_414159452.1 1857370..1858587(-) (pilC) [Pseudomonas sp. BNK-45]
ATGGCGGCAAAAGCTCCCACGACGAGTGTCTATCTCTGGCACGGCATCGACGGCCAGGGCCAGGTGATGCACGGCGAACT
GAGCGCTGCCAACCCGGGACTGATCAGGGCCCGGTTGCGCAAGCAGGGCATCACCCCGACCCGGGTGCGCCGCAAGCCAA
GGGCCTGGCCTCGACTGGGCCAAGGGATCAGCCCCCGGGAGATCGCCCTGTTCACTCGCCAACTGGCCACGTTGATGCAG
GCCGGGGTGCCGCTGCTGCAGGCCTTCGACATCATTGCCGAAGGCTTTGAACAGCCCCTGATGCGCCAGCTGCTGGCCAG
CCTCAAGCGCGAAATCGAGGCCGGTTCCAGCCTGGCGAGCGCACTGCGCCGGCATCCACGCCACTTTGATGCGCTGTACT
GCAACCTGGTGGATGCCGGCGAGCAGGCCGGGGCCCTGGACACGCTGCTGGAACGTGTCGCGACCCACAAGGAAAAGAGC
GAAAACCTCAAGACCCGGGTAAAGCAAGCCATGGTCTATCCGCTGGCGGTGATCGGCGTGGCAGTCGTCGTCAGCAGCAT
CCTGTTGCTCAAAGTGGTTCCCCAGTTCCAGAGCCTGTTCGCCGGGTTCGACGCCGAGTTGCCGCCGCTCACTCAATGGG
TGATCAACCTCTCCCAGGTGCTCCAGCGCCACGGCGGACTCTTGCTCGCCGCCAGCCTGCTGGTCGGTGTCGGCCTGATC
CAGGCCTATCGACGCTCGGCACGCCTGCGGGACACGGTGGATGTGGGGCTGCTGCGCTTGCCCCTGGCCGGCCCCTTGCT
GCAAAAATCCGCCGTGGCGCGCTATGCCCGAATCCTGGCGACCACCTTCGCTGCCGGGGTGCCCCTGGTGCAGGCTCTGG
ACTCGGTGGCCGGAACCAGTGGCAATCGGGTCTTCAAGCAAGCGGTGGAGCGCATTCGCCAACAGGTGGCCAGCGGCATG
CAATTGCACTTTGCCATGCGCGCCAGCGGGGTCTTCCCCGGCATGGCGGTCCAGATGACCGCCATCGGTGAAGAGTCCGG
AACCCTGGACCACTTGCTGGAAAAGGTCGCGACCCACTATGAAGTCGAGGTGGACCACCTGGTGGACAGCCTGACCCGTC
TCATGGAGCCGTTGATCATGGTGCTTCTGGGCAGTATCGTCGGCGCCCTGGTGGTGGCCATGTACCTGCCTGTCTTTCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.025

100

0.58
  pilC Acinetobacter baylyi ADP1

52.078

100

0.526
  pilC Acinetobacter baumannii D1279779

51.733

99.753

0.516
  pilC Legionella pneumophila strain ERS1305867

46.437

100

0.467
  pilC Vibrio campbellii strain DS40M4

40.741

100

0.407
  pilG Neisseria gonorrhoeae MS11

42.597

95.062

0.405
  pilC Vibrio cholerae strain A1552

41.221

97.037

0.4
  pilG Neisseria meningitidis 44/76-A

41.818

95.062

0.398
  pilC Thermus thermophilus HB27

36.842

98.519

0.363

Multiple sequence alignment