Detailed information NTG1093800

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMGG8_RS08610
• Genome accession: NZ_CP179909
• Coordinates: 1856495..1857367 (-)
• Length: 290 a.a.
• NCBI ID: WP_414159451.1
• Uniprot ID: -
• Organism: Pseudomonas sp. BNK-45
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1851495..1862367

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMGG8_RS08570 (ACMGG8_08570)	-	1851726..1853024 (-)	1299	WP_060841146.1	NAD(P)/FAD-dependent oxidoreductase	-
ACMGG8_RS08575 (ACMGG8_08575)	-	1853085..1853258 (-)	174	WP_060841145.1	DUF3094 family protein	-
ACMGG8_RS08580 (ACMGG8_08580)	-	1853447..1854076 (-)	630	WP_060841144.1	DUF1780 domain-containing protein	-
ACMGG8_RS08585 (ACMGG8_08585)	-	1854223..1854690 (+)	468	WP_414159450.1	FAD/FMN-containing dehydrogenase	-
ACMGG8_RS08590 (ACMGG8_08590)	-	1854687..1855376 (+)	690	WP_016968160.1	energy-coupling factor ABC transporter permease	-
ACMGG8_RS08595 (ACMGG8_08595)	-	1855440..1855655 (+)	216	WP_016968161.1	hypothetical protein	-
ACMGG8_RS08600 (ACMGG8_08600)	yacG	1855675..1855878 (-)	204	WP_060841142.1	DNA gyrase inhibitor YacG	-
ACMGG8_RS08605 (ACMGG8_08605)	coaE	1855875..1856498 (-)	624	WP_060841141.1	dephospho-CoA kinase	-
ACMGG8_RS08610 (ACMGG8_08610)	pilD	1856495..1857367 (-)	873	WP_414159451.1	prepilin peptidase	Machinery gene
ACMGG8_RS08615 (ACMGG8_08615)	pilC	1857370..1858587 (-)	1218	WP_414159452.1	type II secretion system F family protein	Machinery gene
ACMGG8_RS08620 (ACMGG8_08620)	-	1858909..1859325 (+)	417	WP_060841138.1	pilin	-
ACMGG8_RS08625 (ACMGG8_08625)	-	1859568..1859924 (+)	357	WP_060841137.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31826.09 Da
• Isoelectric Point: 7.9880

>NTDB_id=1093800 ACMGG8_RS08610 WP_414159451.1 1856495..1857367(-) (pilD) [Pseudomonas sp. BNK-45]
MSLTEVLTLYPLAFVLAALILGLLVGSFLNVLVWRLPKMLERDWRAQAHEVLGLPPEPAGAPYNLLLPHSQCPHCAQPIR
PWENIPLLSYLCLRGRCRHCKAAISPRYPLTELACGLISAFVAWHFGFGWQAGLLLILSWGLIAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLVSLGDALWGAVLGYLSLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQVLPLTLLLSSLVG
AIIGTLMLRLNRAKTSTPIPFGPFLAIAGWIALLWGGQMTDFYLQAVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=1093800 ACMGG8_RS08610 WP_414159451.1 1856495..1857367(-) (pilD) [Pseudomonas sp. BNK-45]
ATGTCCTTGACTGAAGTCCTGACCCTCTACCCCCTGGCTTTCGTGTTGGCCGCCCTGATACTGGGGCTGCTGGTCGGCAG
CTTCCTCAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCGCCCAGGCCCACGAAGTGCTGGGGC
TGCCCCCGGAGCCGGCAGGGGCGCCCTATAACCTGCTGCTGCCCCATTCCCAGTGTCCGCATTGCGCACAGCCAATCCGC
CCCTGGGAGAACATTCCCCTGCTCAGCTATCTGTGCCTGCGGGGCCGTTGCCGCCATTGCAAGGCCGCCATCAGCCCCCG
CTACCCGCTGACCGAGCTGGCCTGCGGGTTGATCTCGGCCTTCGTTGCCTGGCACTTCGGCTTCGGCTGGCAGGCGGGCC
TGTTGCTGATCCTCAGCTGGGGGCTGATCGCCATGAGTCTGATCGATGCCGATCACCAGCTGCTGCCCGACGTGCTGGTG
TTGCCGTTGCTGTGGCTGGGACTGATCGCCAACAGCTTCGGGCTGCTGGTCAGCCTGGGCGATGCCCTGTGGGGGGCGGT
ACTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATGGGGCACGGCGACT
TCAAGCTGCTGGCGATGCTGGGAGCCTGGGGCGGATGGCAGGTGCTGCCGCTGACCCTGCTCCTCTCCTCACTGGTGGGC
GCCATCATCGGCACCCTCATGCTGCGCCTGAACCGGGCCAAAACCTCGACGCCGATCCCCTTTGGCCCTTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATGACCGACTTCTATCTGCAGGCTGTCGGCTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.401	98.966	0.548
pilD	Vibrio campbellii strain DS40M4	50.526	98.276	0.497
pilD	Acinetobacter baumannii D1279779	50	94.483	0.472
pilD	Acinetobacter nosocomialis M2	50	94.483	0.472
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459