Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACLSIV_RS02325 Genome accession   NZ_CP178385
Coordinates   463127..463456 (-) Length   109 a.a.
NCBI ID   WP_163604800.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain GCULR     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458127..468456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSIV_RS02295 (ACLSIV_02295) obgE 459174..460493 (+) 1320 WP_096039988.1 GTPase ObgE -
  ACLSIV_RS02300 (ACLSIV_02300) - 460580..460756 (+) 177 WP_003137484.1 hypothetical protein -
  ACLSIV_RS02305 (ACLSIV_02305) - 460753..461739 (+) 987 WP_061773784.1 PhoH family protein -
  ACLSIV_RS02310 (ACLSIV_02310) - 461732..462190 (+) 459 WP_138492264.1 HIT family protein -
  ACLSIV_RS02315 (ACLSIV_02315) ybeY 462248..462739 (+) 492 WP_061773786.1 rRNA maturation RNase YbeY -
  ACLSIV_RS02320 (ACLSIV_02320) - 462723..463124 (+) 402 WP_138492265.1 diacylglycerol kinase family protein -
  ACLSIV_RS02325 (ACLSIV_02325) comFC 463127..463456 (-) 330 WP_163604800.1 ComF family protein Machinery gene
  ACLSIV_RS02330 (ACLSIV_02330) comFA/cflA 463771..465045 (-) 1275 WP_172506944.1 DEAD/DEAH box helicase Machinery gene
  ACLSIV_RS02335 (ACLSIV_02335) - 465089..465712 (+) 624 WP_096039992.1 YigZ family protein -
  ACLSIV_RS02345 (ACLSIV_02345) - 466537..467400 (+) 864 WP_167839777.1 S1 RNA-binding domain-containing protein -
  ACLSIV_RS02350 (ACLSIV_02350) msrA 467397..467918 (+) 522 WP_061773792.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACLSIV_RS02355 (ACLSIV_02355) - 467915..468124 (+) 210 WP_096039994.1 YozE family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12126.92 Da        Isoelectric Point: 10.4051

>NTDB_id=1089286 ACLSIV_RS02325 WP_163604800.1 463127..463456(-) (comFC) [Lactococcus raffinolactis strain GCULR]
MKGQTLVPVPVSPERLQSRGFNQVTGFLSSAKLPYLELLTKEETRHQSHKNRAERLASENPFHLKKNVTIPEHVVLVDDI
FTTGTTLKNGASILKNAGCAHVSTFSLFR

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1089286 ACLSIV_RS02325 WP_163604800.1 463127..463456(-) (comFC) [Lactococcus raffinolactis strain GCULR]
TTGAAAGGCCAAACTCTCGTACCTGTGCCAGTTTCACCTGAACGACTACAAAGTAGAGGCTTTAATCAAGTCACGGGATT
TTTAAGTAGCGCTAAACTTCCTTATCTTGAACTCCTGACCAAAGAAGAAACGCGGCACCAATCTCACAAAAATCGTGCAG
AGCGCTTAGCTTCTGAAAATCCTTTTCATCTCAAGAAAAATGTTACCATCCCTGAGCACGTGGTTCTCGTAGATGATATT
TTCACGACAGGGACGACCCTTAAAAATGGTGCAAGCATATTAAAAAACGCAGGCTGCGCCCACGTTTCTACTTTTTCATT
ATTTCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(60-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

53.846

95.413

0.514
  comFC/cflB Streptococcus mitis NCTC 12261

50.926

99.083

0.505
  comFC/cflB Streptococcus mitis SK321

50

99.083

0.495
  comFC/cflB Streptococcus pneumoniae TIGR4

49.074

99.083

0.486
  comFC/cflB Streptococcus pneumoniae R6

49.074

99.083

0.486
  comFC/cflB Streptococcus pneumoniae Rx1

49.074

99.083

0.486
  comFC/cflB Streptococcus pneumoniae D39

49.074

99.083

0.486
  comFC Bacillus subtilis subsp. subtilis str. 168

40

96.33

0.385
  comFC Latilactobacillus sakei subsp. sakei 23K

37.615

100

0.376
  comFC Legionella pneumophila strain ERS1305867

34.188

100

0.367
  comFC Legionella pneumophila str. Paris

34.188

100

0.367

Multiple sequence alignment