Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACLSIV_RS01515 | Genome accession | NZ_CP178385 |
| Coordinates | 285225..285620 (+) | Length | 131 a.a. |
| NCBI ID | WP_412921781.1 | Uniprot ID | - |
| Organism | Lactococcus raffinolactis strain GCULR | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 273355..293826 | 285225..285620 | within | 0 |
Gene organization within MGE regions
Location: 273355..293826
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLSIV_RS01460 (ACLSIV_01460) | - | 273355..274305 (+) | 951 | WP_412921763.1 | glycosyltransferase family 2 protein | - |
| ACLSIV_RS01465 (ACLSIV_01465) | - | 274324..275832 (+) | 1509 | WP_412921764.1 | hypothetical protein | - |
| ACLSIV_RS01470 (ACLSIV_01470) | - | 275963..276205 (+) | 243 | WP_412921766.1 | hypothetical protein | - |
| ACLSIV_RS01475 (ACLSIV_01475) | - | 276452..277987 (+) | 1536 | WP_412921768.1 | C39 family peptidase | - |
| ACLSIV_RS01480 (ACLSIV_01480) | - | 277994..278359 (+) | 366 | WP_412921769.1 | hypothetical protein | - |
| ACLSIV_RS01485 (ACLSIV_01485) | - | 278469..280307 (+) | 1839 | WP_412921770.1 | glycerophosphodiester phosphodiesterase family protein | - |
| ACLSIV_RS01490 (ACLSIV_01490) | - | 280587..282596 (+) | 2010 | WP_412921772.1 | glucosaminidase domain-containing protein | - |
| ACLSIV_RS01495 (ACLSIV_01495) | pepA | 282651..283736 (-) | 1086 | WP_412921774.1 | glutamyl aminopeptidase | - |
| ACLSIV_RS01500 (ACLSIV_01500) | - | 283877..284191 (+) | 315 | WP_412921776.1 | hypothetical protein | - |
| ACLSIV_RS01505 (ACLSIV_01505) | - | 284193..284510 (+) | 318 | WP_412921777.1 | thioredoxin family protein | - |
| ACLSIV_RS01510 (ACLSIV_01510) | ytpR | 284541..285164 (+) | 624 | WP_412921779.1 | YtpR family tRNA-binding protein | - |
| ACLSIV_RS01515 (ACLSIV_01515) | ssbA | 285225..285620 (+) | 396 | WP_412921781.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLSIV_RS01520 (ACLSIV_01520) | - | 285654..286811 (+) | 1158 | WP_412921783.1 | CHAP domain-containing protein | - |
| ACLSIV_RS01525 (ACLSIV_01525) | groES | 286982..287266 (+) | 285 | WP_061773656.1 | co-chaperone GroES | - |
| ACLSIV_RS01530 (ACLSIV_01530) | groL | 287333..288964 (+) | 1632 | WP_167839669.1 | chaperonin GroEL | - |
| ACLSIV_RS01535 (ACLSIV_01535) | - | 289167..289427 (+) | 261 | WP_061773658.1 | SemiSWEET family transporter | - |
| ACLSIV_RS01540 (ACLSIV_01540) | - | 289572..290090 (-) | 519 | WP_061773659.1 | hypothetical protein | - |
| ACLSIV_RS01545 (ACLSIV_01545) | - | 290573..291865 (+) | 1293 | WP_003138554.1 | adenylosuccinate synthase | - |
| ACLSIV_RS01550 (ACLSIV_01550) | - | 292155..292688 (+) | 534 | WP_167839672.1 | RNA polymerase sigma factor | - |
| ACLSIV_RS01555 (ACLSIV_01555) | - | 292681..292887 (+) | 207 | WP_412921787.1 | hypothetical protein | - |
| ACLSIV_RS01560 (ACLSIV_01560) | - | 292891..293826 (-) | 936 | WP_047914927.1 | IS30 family transposase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14654.84 Da Isoelectric Point: 6.4676
>NTDB_id=1089277 ACLSIV_RS01515 WP_412921781.1 285225..285620(+) (ssbA) [Lactococcus raffinolactis strain GCULR]
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKNADGQRDADFLTIIIWGKPAELFASYGKKGSLVSIEGELRTC
RYEDKAGVTHYVTEVLCHQFNLLESRAAVALRENQVETVTDVMLEAEDLPF
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKNADGQRDADFLTIIIWGKPAELFASYGKKGSLVSIEGELRTC
RYEDKAGVTHYVTEVLCHQFNLLESRAAVALRENQVETVTDVMLEAEDLPF
Nucleotide
Download Length: 396 bp
>NTDB_id=1089277 ACLSIV_RS01515 WP_412921781.1 285225..285620(+) (ssbA) [Lactococcus raffinolactis strain GCULR]
ATGTTAAATAAAAGTTTACTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAGAAAACACCAACGGATAAATCTGTCTT
GCGCGTGACCTTAGCTGTTAGCCGACAATTTAAAAACGCTGATGGGCAACGGGATGCAGATTTTTTGACCATTATCATTT
GGGGCAAACCCGCAGAGCTATTTGCATCCTACGGTAAAAAAGGCAGTCTAGTTTCGATTGAGGGAGAACTCCGAACGTGT
CGTTACGAGGACAAAGCTGGTGTAACTCACTATGTGACAGAAGTCCTATGTCATCAGTTCAATCTGTTAGAAAGTCGAGC
AGCAGTTGCGCTTAGAGAGAATCAGGTTGAGACGGTGACCGATGTCATGCTAGAGGCTGAAGATTTGCCGTTTTAG
ATGTTAAATAAAAGTTTACTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAGAAAACACCAACGGATAAATCTGTCTT
GCGCGTGACCTTAGCTGTTAGCCGACAATTTAAAAACGCTGATGGGCAACGGGATGCAGATTTTTTGACCATTATCATTT
GGGGCAAACCCGCAGAGCTATTTGCATCCTACGGTAAAAAAGGCAGTCTAGTTTCGATTGAGGGAGAACTCCGAACGTGT
CGTTACGAGGACAAAGCTGGTGTAACTCACTATGTGACAGAAGTCCTATGTCATCAGTTCAATCTGTTAGAAAGTCGAGC
AGCAGTTGCGCTTAGAGAGAATCAGGTTGAGACGGTGACCGATGTCATGCTAGAGGCTGAAGATTTGCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
62.121 |
100 |
0.626 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
59.848 |
100 |
0.603 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
55.303 |
100 |
0.557 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.303 |
100 |
0.557 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
54.545 |
100 |
0.55 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
54.545 |
100 |
0.55 |
| ssbB/cilA | Streptococcus mitis SK321 |
54.545 |
100 |
0.55 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
54.545 |
100 |
0.55 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
58.974 |
89.313 |
0.527 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |