Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLIMJ_RS05495 Genome accession   NZ_CP177034
Coordinates   1229219..1230427 (-) Length   402 a.a.
NCBI ID   WP_108525317.1    Uniprot ID   -
Organism   Pseudomonas veronii strain MPB10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224219..1235427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMJ_RS05460 (ACLIMJ_05460) - 1225175..1225924 (+) 750 WP_108525315.1 hydroxypyruvate isomerase family protein -
  ACLIMJ_RS05465 (ACLIMJ_05465) - 1226097..1226564 (+) 468 WP_057005137.1 hypothetical protein -
  ACLIMJ_RS05470 (ACLIMJ_05470) - 1226561..1227250 (+) 690 WP_046384732.1 energy-coupling factor ABC transporter permease -
  ACLIMJ_RS05475 (ACLIMJ_05475) - 1227327..1227542 (+) 216 WP_003171680.1 hypothetical protein -
  ACLIMJ_RS05480 (ACLIMJ_05480) yacG 1227539..1227739 (-) 201 WP_017845472.1 DNA gyrase inhibitor YacG -
  ACLIMJ_RS05485 (ACLIMJ_05485) coaE 1227736..1228359 (-) 624 WP_046384731.1 dephospho-CoA kinase -
  ACLIMJ_RS05490 (ACLIMJ_05490) pilD 1228356..1229222 (-) 867 WP_046384730.1 prepilin peptidase Machinery gene
  ACLIMJ_RS05495 (ACLIMJ_05495) pilC 1229219..1230427 (-) 1209 WP_108525317.1 type II secretion system F family protein Machinery gene
  ACLIMJ_RS05500 (ACLIMJ_05500) - 1230629..1231042 (+) 414 WP_017845468.1 pilin -
  ACLIMJ_RS05505 (ACLIMJ_05505) - 1231078..1232487 (+) 1410 WP_108525319.1 O-antigen ligase family protein -
  ACLIMJ_RS05515 (ACLIMJ_05515) - 1232736..1233041 (+) 306 WP_017845466.1 DUF6388 family protein -
  ACLIMJ_RS05520 (ACLIMJ_05520) nadC 1233085..1233933 (-) 849 WP_046384727.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43372.64 Da        Isoelectric Point: 9.9383

>NTDB_id=1084951 ACLIMJ_RS05495 WP_108525317.1 1229219..1230427(-) (pilC) [Pseudomonas veronii strain MPB10]
MTNAATTYAWEGINRQGRRVSGQTVSHDLARVKAQLRQQGICPGRVRKQSAGLPSLAAPIKPADIALFTRQLATLLKAGI
ALLQAFDVISEGFDNRHMYRLVKGLKQEIGAGNTLASALRKQPRYFDDLYCNLVAAGEQAGALETLLERVADHLEKSERL
KARIKKAMTYPIAVIVVASLVSSLLLIHVVPQFQNLFASVDSELPGFTLYVIALSEFLQQAWWMLALSLGAGGLGLRRAY
RVSPGFRHWLDASLLKAPLAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAAAAGNQLFKQAIEHMRHDVSTGMPLN
RAMAASGLFPGMAIQMTAIGEESGTLEHMLEKVASHYASDVDTLVDQLTSLMEPLIMVVLGGIVGALVIALYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1084951 ACLIMJ_RS05495 WP_108525317.1 1229219..1230427(-) (pilC) [Pseudomonas veronii strain MPB10]
ATGACCAACGCTGCCACGACATACGCTTGGGAAGGCATCAACCGCCAGGGACGCAGGGTGTCCGGGCAAACCGTCAGCCA
CGACCTCGCGCGGGTCAAGGCACAACTGCGCCAGCAAGGGATTTGCCCTGGCCGCGTGCGCAAACAATCCGCCGGCCTGC
CAAGCCTCGCTGCGCCGATCAAACCGGCGGACATTGCCCTGTTCACCCGCCAACTGGCGACACTGCTGAAGGCCGGCATT
GCGTTGCTGCAAGCCTTCGACGTGATCAGCGAAGGCTTCGACAACCGTCACATGTACAGGCTGGTAAAAGGCCTGAAACA
GGAGATCGGCGCCGGGAATACCCTGGCGTCGGCCCTGCGCAAACAGCCGCGCTACTTCGATGACCTGTACTGCAACCTGG
TGGCGGCGGGTGAGCAGGCCGGCGCCCTGGAAACCCTTCTGGAGCGGGTGGCGGATCACCTGGAAAAGAGCGAACGGCTC
AAGGCCCGGATCAAGAAGGCCATGACCTACCCCATCGCGGTCATCGTGGTCGCCAGCCTTGTCAGCAGTCTCTTGCTGAT
CCATGTGGTGCCGCAATTCCAGAACCTGTTCGCCAGCGTGGACAGCGAGTTGCCCGGTTTTACTCTGTACGTGATTGCCT
TGTCCGAGTTCCTGCAACAAGCCTGGTGGATGCTGGCGCTCAGCCTGGGCGCGGGAGGTCTGGGGTTGCGCCGGGCCTAT
CGCGTATCGCCCGGTTTTCGTCATTGGCTGGATGCCAGTTTGTTGAAAGCGCCCCTGGCAGGCACACTGCTGAAAAAGTC
GGCGGTCGCCCGCTACGCGCGCACGCTTTCGACTACGTTCGCGGCCGGAGTGCCTTTGGTGCAGGCCCTGGATTCAGTGG
CCGCCGCTGCCGGCAACCAGCTATTCAAACAGGCTATCGAACATATGCGTCACGATGTATCCACAGGCATGCCGCTGAAT
CGGGCCATGGCCGCCAGCGGCCTGTTCCCTGGCATGGCGATCCAGATGACGGCGATTGGTGAAGAATCCGGCACCCTGGA
GCACATGCTGGAAAAAGTCGCGAGCCACTATGCGTCGGACGTCGACACGCTGGTCGACCAGCTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTGCTCGGCGGGATTGTCGGCGCTTTGGTAATCGCCCTGTACCTGCCGGTCTTCCAACTCGGTACG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.343

98.507

0.585
  pilC Acinetobacter baylyi ADP1

50.623

99.751

0.505
  pilC Acinetobacter baumannii D1279779

48.99

98.507

0.483
  pilC Legionella pneumophila strain ERS1305867

47.727

98.507

0.47
  pilC Vibrio cholerae strain A1552

39.798

98.756

0.393
  pilC Thermus thermophilus HB27

37.688

99.005

0.373
  pilG Neisseria gonorrhoeae MS11

39.108

94.776

0.371
  pilC Vibrio campbellii strain DS40M4

37.913

97.761

0.371
  pilG Neisseria meningitidis 44/76-A

38.32

94.776

0.363

Multiple sequence alignment