Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACLIMJ_RS05490 | Genome accession | NZ_CP177034 |
| Coordinates | 1228356..1229222 (-) | Length | 288 a.a. |
| NCBI ID | WP_046384730.1 | Uniprot ID | A0A4P7Y2K7 |
| Organism | Pseudomonas veronii strain MPB10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1223356..1234222
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLIMJ_RS05455 (ACLIMJ_05455) | - | 1224105..1225007 (-) | 903 | WP_108525313.1 | GntR family transcriptional regulator | - |
| ACLIMJ_RS05460 (ACLIMJ_05460) | - | 1225175..1225924 (+) | 750 | WP_108525315.1 | hydroxypyruvate isomerase family protein | - |
| ACLIMJ_RS05465 (ACLIMJ_05465) | - | 1226097..1226564 (+) | 468 | WP_057005137.1 | hypothetical protein | - |
| ACLIMJ_RS05470 (ACLIMJ_05470) | - | 1226561..1227250 (+) | 690 | WP_046384732.1 | energy-coupling factor ABC transporter permease | - |
| ACLIMJ_RS05475 (ACLIMJ_05475) | - | 1227327..1227542 (+) | 216 | WP_003171680.1 | hypothetical protein | - |
| ACLIMJ_RS05480 (ACLIMJ_05480) | yacG | 1227539..1227739 (-) | 201 | WP_017845472.1 | DNA gyrase inhibitor YacG | - |
| ACLIMJ_RS05485 (ACLIMJ_05485) | coaE | 1227736..1228359 (-) | 624 | WP_046384731.1 | dephospho-CoA kinase | - |
| ACLIMJ_RS05490 (ACLIMJ_05490) | pilD | 1228356..1229222 (-) | 867 | WP_046384730.1 | prepilin peptidase | Machinery gene |
| ACLIMJ_RS05495 (ACLIMJ_05495) | pilC | 1229219..1230427 (-) | 1209 | WP_108525317.1 | type II secretion system F family protein | Machinery gene |
| ACLIMJ_RS05500 (ACLIMJ_05500) | - | 1230629..1231042 (+) | 414 | WP_017845468.1 | pilin | - |
| ACLIMJ_RS05505 (ACLIMJ_05505) | - | 1231078..1232487 (+) | 1410 | WP_108525319.1 | O-antigen ligase family protein | - |
| ACLIMJ_RS05515 (ACLIMJ_05515) | - | 1232736..1233041 (+) | 306 | WP_017845466.1 | DUF6388 family protein | - |
| ACLIMJ_RS05520 (ACLIMJ_05520) | nadC | 1233085..1233933 (-) | 849 | WP_046384727.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31857.15 Da Isoelectric Point: 7.9058
>NTDB_id=1084950 ACLIMJ_RS05490 WP_046384730.1 1228356..1229222(-) (pilD) [Pseudomonas veronii strain MPB10]
MSLLLSQQPWAFVAMAMVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSYLMLRGRCAHCREAISARYPLTELACGLISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSVELLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLVGVC
GGLILLRRSKIQAATPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFK
MSLLLSQQPWAFVAMAMVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSYLMLRGRCAHCREAISARYPLTELACGLISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSVELLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLVGVC
GGLILLRRSKIQAATPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFK
Nucleotide
Download Length: 867 bp
>NTDB_id=1084950 ACLIMJ_RS05490 WP_046384730.1 1228356..1229222(-) (pilD) [Pseudomonas veronii strain MPB10]
TTGAGCCTGCTGTTGAGCCAGCAGCCGTGGGCCTTTGTCGCCATGGCAATGGTGCTGGGCTTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGGGAATGGCGCGCACAGGCCCATGAAGTGCTCGGTTTGCCCG
GCGACCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCGCACTGCAATCAGCCGATTCGGCCGTGG
GAAAACATCCCGCTGCTCAGCTACCTGATGCTCCGGGGCCGCTGTGCCCATTGCCGCGAAGCGATCAGTGCGCGTTATCC
CTTGACCGAACTGGCGTGCGGGTTGATCTCGGCCGTGGTGGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGGCGCAGTGA
TGCTGTTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGTCGACCACCAACTGCTGCCCGATGTGCTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGCGTCGAGCTGCTGGTGCCCCTGCCCGATGCACTGTGGGGTGCAGTGATCGG
CTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGCTGATGTCATCGCTGGTGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGTCGGAGCAAGATCCAGGCGGCCACGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA
TTGAGCCTGCTGTTGAGCCAGCAGCCGTGGGCCTTTGTCGCCATGGCAATGGTGCTGGGCTTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGGGAATGGCGCGCACAGGCCCATGAAGTGCTCGGTTTGCCCG
GCGACCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCGCACTGCAATCAGCCGATTCGGCCGTGG
GAAAACATCCCGCTGCTCAGCTACCTGATGCTCCGGGGCCGCTGTGCCCATTGCCGCGAAGCGATCAGTGCGCGTTATCC
CTTGACCGAACTGGCGTGCGGGTTGATCTCGGCCGTGGTGGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGGCGCAGTGA
TGCTGTTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGTCGACCACCAACTGCTGCCCGATGTGCTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGCGTCGAGCTGCTGGTGCCCCTGCCCGATGCACTGTGGGGTGCAGTGATCGG
CTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGCTGATGTCATCGCTGGTGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGTCGGAGCAAGATCCAGGCGGCCACGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.396 |
96.528 |
0.535 |
| pilD | Vibrio campbellii strain DS40M4 |
50.538 |
96.875 |
0.49 |
| pilD | Acinetobacter baumannii D1279779 |
49.27 |
95.139 |
0.469 |
| pilD | Acinetobacter nosocomialis M2 |
48.905 |
95.139 |
0.465 |
| pilD | Neisseria gonorrhoeae MS11 |
48.148 |
93.75 |
0.451 |