Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLH0H_RS05040 Genome accession   NZ_CP176793
Coordinates   1077760..1078968 (+) Length   402 a.a.
NCBI ID   WP_411381209.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1072760..1083968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0H_RS05015 (ACLH0H_05015) nadC 1074128..1074976 (+) 849 WP_411381207.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACLH0H_RS05020 (ACLH0H_05020) - 1075120..1075425 (-) 306 WP_076951111.1 DUF6388 family protein -
  ACLH0H_RS05030 (ACLH0H_05030) - 1075708..1077108 (-) 1401 WP_411381208.1 O-antigen ligase family protein -
  ACLH0H_RS05035 (ACLH0H_05035) - 1077144..1077557 (-) 414 WP_411382369.1 pilin -
  ACLH0H_RS05040 (ACLH0H_05040) pilC 1077760..1078968 (+) 1209 WP_411381209.1 type II secretion system F family protein Machinery gene
  ACLH0H_RS05045 (ACLH0H_05045) pilD 1078965..1079831 (+) 867 WP_411381210.1 prepilin peptidase Machinery gene
  ACLH0H_RS05050 (ACLH0H_05050) coaE 1079828..1080451 (+) 624 WP_411381211.1 dephospho-CoA kinase -
  ACLH0H_RS05055 (ACLH0H_05055) yacG 1080448..1080648 (+) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  ACLH0H_RS05060 (ACLH0H_05060) - 1080645..1080860 (-) 216 WP_003171680.1 hypothetical protein -
  ACLH0H_RS05065 (ACLH0H_05065) - 1080925..1081614 (-) 690 WP_411381212.1 energy-coupling factor ABC transporter permease -
  ACLH0H_RS05070 (ACLH0H_05070) - 1081718..1082347 (+) 630 WP_411381213.1 DUF1780 domain-containing protein -
  ACLH0H_RS05075 (ACLH0H_05075) - 1082404..1082577 (+) 174 WP_411381214.1 DUF3094 family protein -
  ACLH0H_RS05080 (ACLH0H_05080) - 1082638..1083936 (+) 1299 WP_411381215.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43431.79 Da        Isoelectric Point: 10.0640

>NTDB_id=1083043 ACLH0H_RS05040 WP_411381209.1 1077760..1078968(+) (pilC) [Pseudomonas sp. MPB26]
MDNAPTMYAWEGINRKGRRVSGQTTGHNLALVKAKLRRQGISPEQVRKQSPVLQSLAPSIKSTDITLFTRQLATLLKAGI
ALLQAFDIISEGFDNRAMREQVHGLKQAIAAGSSLTEALRKQPRYFDALYCNLVAAGEQAGALETLLERVAIHREKSEHL
KARIKKAMTYPIAVLVVASLVTGILLIYVVPQFQNLFAGVDGTLPGFTLQVIALSEFVQRAWWILALGFLAAGTGLRHAY
RTLPALRLWVDTGLLKAPLAGKLLSKSAVARYARTLSTTFAAGVPLVQALDSVAGAVGSGPFKQAIEHMRHEVSTGMSLN
QSMLASGLFPAMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1083043 ACLH0H_RS05040 WP_411381209.1 1077760..1078968(+) (pilC) [Pseudomonas sp. MPB26]
ATGGACAACGCTCCGACGATGTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGGCAAACCACAGGCCA
CAACCTTGCCCTGGTCAAGGCTAAATTGCGCCGGCAAGGCATCAGCCCCGAGCAGGTGCGCAAGCAATCCCCAGTGCTGC
AGAGCCTGGCACCGTCGATCAAATCGACGGACATCACCCTGTTCACGCGCCAACTGGCTACGCTGCTCAAAGCCGGCATT
GCGCTTCTGCAAGCCTTCGACATCATCAGCGAAGGCTTCGACAACCGAGCGATGCGTGAACAGGTGCACGGCTTGAAGCA
GGCAATCGCCGCCGGCTCCAGCCTGACTGAAGCGCTGCGCAAACAACCGCGCTATTTCGATGCGCTGTATTGCAATCTGG
TGGCCGCCGGCGAGCAGGCCGGGGCGCTTGAAACGCTGCTGGAACGCGTGGCGATCCATCGGGAAAAGAGCGAGCACTTA
AAGGCCAGAATCAAAAAAGCCATGACCTACCCGATTGCAGTGCTGGTGGTGGCCAGCCTTGTCACCGGCATTCTGTTGAT
CTACGTCGTGCCACAGTTCCAGAACCTGTTCGCCGGGGTCGACGGCACGCTGCCCGGTTTCACGTTGCAGGTGATTGCCC
TGTCCGAGTTCGTGCAGCGAGCCTGGTGGATCCTGGCACTTGGCTTTTTGGCGGCAGGTACGGGGCTGCGCCATGCCTAT
AGGACCTTGCCTGCCTTGCGCCTCTGGGTGGACACCGGTTTGTTGAAAGCGCCCCTGGCAGGCAAACTGTTGAGCAAATC
CGCCGTGGCCCGTTACGCCCGAACGCTTTCCACCACCTTTGCCGCTGGGGTTCCATTGGTCCAGGCATTGGATTCGGTCG
CTGGCGCCGTGGGATCAGGGCCGTTCAAACAGGCAATCGAACATATGCGACACGAGGTCTCCACTGGCATGTCATTGAAT
CAATCCATGCTGGCCAGCGGCCTGTTCCCCGCCATGGCGATCCAGATGACCGCCATCGGCGAAGAGTCTGGCACGCTGGA
CCGCATGCTGGAAAAAGTCGCCAACCATTACGAGGCCGACGTGGACAACCTCGTCGATAATCTCACCAGCCTGATGGAGC
CACTGATCATGGTGGTTCTGGGGAGCATTGTCGGCGCCCTGGTGATCGCCATGTATTTGCCGGTCTTCCAACTGGGGAGC
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.987

98.259

0.58
  pilC Acinetobacter baumannii D1279779

51.256

99.005

0.507
  pilC Acinetobacter baylyi ADP1

51.263

98.507

0.505
  pilC Legionella pneumophila strain ERS1305867

48.668

100

0.5
  pilG Neisseria gonorrhoeae MS11

42.82

95.274

0.408
  pilG Neisseria meningitidis 44/76-A

42.298

95.274

0.403
  pilC Vibrio cholerae strain A1552

40.657

98.507

0.401
  pilC Vibrio campbellii strain DS40M4

38.579

98.01

0.378
  pilC Thermus thermophilus HB27

36.658

99.751

0.366

Multiple sequence alignment