Detailed information NTG1083044

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACLH0H_RS05045
• Genome accession: NZ_CP176793
• Coordinates: 1078965..1079831 (+)
• Length: 288 a.a.
• NCBI ID: WP_411381210.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MPB26
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1073965..1084831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLH0H_RS05015 (ACLH0H_05015)	nadC	1074128..1074976 (+)	849	WP_411381207.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACLH0H_RS05020 (ACLH0H_05020)	-	1075120..1075425 (-)	306	WP_076951111.1	DUF6388 family protein	-
ACLH0H_RS05030 (ACLH0H_05030)	-	1075708..1077108 (-)	1401	WP_411381208.1	O-antigen ligase family protein	-
ACLH0H_RS05035 (ACLH0H_05035)	-	1077144..1077557 (-)	414	WP_411382369.1	pilin	-
ACLH0H_RS05040 (ACLH0H_05040)	pilC	1077760..1078968 (+)	1209	WP_411381209.1	type II secretion system F family protein	Machinery gene
ACLH0H_RS05045 (ACLH0H_05045)	pilD	1078965..1079831 (+)	867	WP_411381210.1	prepilin peptidase	Machinery gene
ACLH0H_RS05050 (ACLH0H_05050)	coaE	1079828..1080451 (+)	624	WP_411381211.1	dephospho-CoA kinase	-
ACLH0H_RS05055 (ACLH0H_05055)	yacG	1080448..1080648 (+)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
ACLH0H_RS05060 (ACLH0H_05060)	-	1080645..1080860 (-)	216	WP_003171680.1	hypothetical protein	-
ACLH0H_RS05065 (ACLH0H_05065)	-	1080925..1081614 (-)	690	WP_411381212.1	energy-coupling factor ABC transporter permease	-
ACLH0H_RS05070 (ACLH0H_05070)	-	1081718..1082347 (+)	630	WP_411381213.1	DUF1780 domain-containing protein	-
ACLH0H_RS05075 (ACLH0H_05075)	-	1082404..1082577 (+)	174	WP_411381214.1	DUF3094 family protein	-
ACLH0H_RS05080 (ACLH0H_05080)	-	1082638..1083936 (+)	1299	WP_411381215.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31525.67 Da
• Isoelectric Point: 7.6849

>NTDB_id=1083044 ACLH0H_RS05045 WP_411381210.1 1078965..1079831(+) (pilD) [Pseudomonas sp. MPB26]
MSLLLVAYPWAFVVMAAVLGLIVGSFLNVVVWRLPKMLEREWRAQAHEVLGLPAEPGGPTYNLMQPNSCCPHCNHPIRPW
ENIPLLSYLLLRGRCAHCQGAISARYPLTELACALISALVAGHFGFGWQAGAMLVLSWGLLVMSLIDADHQLLPDVLVMP
LLWLGLIANGFDLLTTLPDALWGAVLGYVSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPLTLLMSSLVGVV
VGLILMRLRKAQASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1083044 ACLH0H_RS05045 WP_411381210.1 1078965..1079831(+) (pilD) [Pseudomonas sp. MPB26]
TTGAGCCTGCTGCTGGTTGCATACCCATGGGCTTTTGTCGTGATGGCGGCGGTGTTGGGGCTGATCGTCGGCAGCTTCCT
CAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCGCCCAGGCCCATGAGGTACTCGGCCTGCCCG
CCGAGCCCGGCGGGCCGACCTACAACCTCATGCAGCCCAATTCCTGCTGCCCACACTGCAATCACCCGATACGTCCCTGG
GAAAATATTCCGCTGCTCAGTTACCTGTTGCTCAGAGGCCGTTGCGCCCATTGCCAGGGGGCGATCAGCGCCCGCTACCC
GCTGACCGAACTGGCCTGCGCGCTGATCTCGGCCCTGGTGGCCGGGCATTTCGGCTTTGGCTGGCAGGCAGGCGCGATGC
TGGTGCTGAGCTGGGGGTTGCTGGTAATGAGCCTGATCGATGCGGACCATCAGCTGTTGCCGGATGTGCTGGTGATGCCG
CTGCTGTGGCTGGGACTCATCGCTAACGGGTTCGACCTGCTGACGACATTGCCCGATGCCCTGTGGGGCGCAGTGCTCGG
GTACGTGAGCCTTTGGAGCGTGTTCTGGCTGTTCAAACTGGTCACCGGCAAAGACGGCATGGGCCACGGCGACTTCAAGT
TGCTGGCGCTGCTCGGCGCATGGGGGGGCTGGCAGATCCTGCCGCTGACACTGCTGATGTCATCACTGGTCGGGGTGGTG
GTGGGCTTGATCCTGATGCGCCTGCGCAAGGCCCAGGCGTCGACACCCATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.245	99.306	0.549
pilD	Vibrio campbellii strain DS40M4	52.143	97.222	0.507
pilD	Neisseria gonorrhoeae MS11	51.481	93.75	0.483
pilD	Acinetobacter nosocomialis M2	48.54	95.139	0.462
pilD	Acinetobacter baumannii D1279779	48.54	95.139	0.462