Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACK2V4_RS04580 | Genome accession | NZ_CP176646 |
| Coordinates | 964589..964873 (+) | Length | 94 a.a. |
| NCBI ID | WP_021449594.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain GTVSS-031 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 959589..969873
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK2V4_RS04570 (ACK2V4_04570) | - | 962107..962379 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| ACK2V4_RS04575 (ACK2V4_04575) | ppiD | 962579..964438 (+) | 1860 | WP_062855060.1 | peptidylprolyl isomerase | - |
| ACK2V4_RS04580 (ACK2V4_04580) | comEA | 964589..964873 (+) | 285 | WP_021449594.1 | ComEA family DNA-binding protein | Machinery gene |
| ACK2V4_RS04585 (ACK2V4_04585) | rrtA | 964964..965515 (-) | 552 | WP_005482515.1 | rhombosortase | - |
| ACK2V4_RS04590 (ACK2V4_04590) | - | 965519..966133 (+) | 615 | WP_005456903.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACK2V4_RS04595 (ACK2V4_04595) | - | 966143..967477 (-) | 1335 | WP_062855061.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACK2V4_RS04600 (ACK2V4_04600) | yfbR | 967490..968074 (-) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| ACK2V4_RS04605 (ACK2V4_04605) | - | 968166..969380 (-) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10249.91 Da Isoelectric Point: 5.8425
>NTDB_id=1081906 ACK2V4_RS04580 WP_021449594.1 964589..964873(+) (comEA) [Vibrio parahaemolyticus strain GTVSS-031]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=1081906 ACK2V4_RS04580 WP_021449594.1 964589..964873(+) (comEA) [Vibrio parahaemolyticus strain GTVSS-031]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCATGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACAATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCATGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACAATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| comEA | Vibrio campbellii strain DS40M4 |
77.895 |
100 |
0.787 |
| comEA | Vibrio cholerae C6706 |
62.766 |
100 |
0.628 |
| comEA | Vibrio cholerae strain A1552 |
62.766 |
100 |
0.628 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |