Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   UPTC15744_RS02285 Genome accession   NZ_CP176594
Coordinates   419214..420278 (+) Length   354 a.a.
NCBI ID   WP_257906206.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15744     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414214..425278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15744_RS02260 (UPTC15744_00444) - 414315..415238 (-) 924 WP_257906062.1 AAA family ATPase -
  UPTC15744_RS02265 (UPTC15744_00445) - 415320..417422 (-) 2103 WP_257906061.1 transposase family protein -
  UPTC15744_RS02270 (UPTC15744_00446) - 417424..417624 (-) 201 WP_039663976.1 Mu phage-associated protein -
  UPTC15744_RS02275 (UPTC15744_00447) - 417756..418424 (+) 669 WP_257906060.1 helix-turn-helix transcriptional regulator -
  UPTC15744_RS02280 (UPTC15744_00448) - 418431..419024 (-) 594 WP_257906059.1 hypothetical protein -
  UPTC15744_RS02285 (UPTC15744_00396) ctsE 419214..420278 (+) 1065 WP_257906206.1 GspE/PulE family protein Machinery gene
  UPTC15744_RS02290 (UPTC15744_00449) - 420275..421435 (+) 1161 WP_257906058.1 type II secretion system F family protein -
  UPTC15744_RS02295 (UPTC15744_00450) - 421432..422184 (-) 753 WP_039617669.1 TSUP family transporter -
  UPTC15744_RS02300 (UPTC15744_00451) - 422169..422918 (-) 750 WP_257906057.1 TIGR02757 family protein -
  UPTC15744_RS02305 (UPTC15744_00452) flgK 422918..424747 (-) 1830 WP_087685212.1 flagellar hook-associated protein FlgK -
  UPTC15744_RS02310 (UPTC15744_00453) flgN 424758..425192 (-) 435 WP_039617675.1 flagellar export chaperone FlgN -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 40744.86 Da        Isoelectric Point: 8.8195

>NTDB_id=1081301 UPTC15744_RS02285 WP_257906206.1 419214..420278(+) (ctsE) [Campylobacter lari strain RM15744]
MHLEPLENEVLIRFRIDGELKYIHSFDVSSYQALLMHVKIIALLNVAEQRQAQDGSFSKVILEQKYDFRISIMPLLFGQS
IVFRILKQYEHVLKLDRLFIKEENLTLLKKCMNAPYGLILFCGPTGSGKSTFMHAILNEFDQNKKIITLEDPIEYKLKHA
QQILLNSKTGFDFYKALRAVLRQDPDVIMVGEIRDEESLDIVLKASLSGHLVLSTLHTNGAIEAIFRMKHMGAKEYLIAY
ALNLIIAQRLVRKLCECKEASDEKFHFQNQVFEGKFYKAKGCVKCMYSGYKGRLMVVEFLFLDHNLKSMIENNANYENIL
TYALKKGFLTLGRDALEKVKLGLTSVDELRKIGF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1081301 UPTC15744_RS02285 WP_257906206.1 419214..420278(+) (ctsE) [Campylobacter lari strain RM15744]
ATTCATTTGGAGCCTTTAGAAAATGAAGTTTTGATAAGATTTAGAATAGATGGAGAATTAAAATATATCCATAGTTTTGA
TGTGAGTTCTTATCAGGCTTTATTAATGCATGTAAAAATCATTGCTTTGCTTAATGTAGCAGAGCAAAGACAAGCCCAAG
ATGGGAGTTTTTCTAAGGTTATTTTAGAGCAAAAATATGATTTTAGAATTTCAATTATGCCTTTGTTATTTGGACAAAGT
ATAGTGTTTAGAATTTTAAAACAATATGAGCATGTTTTAAAACTCGATAGACTTTTTATTAAAGAAGAAAATTTAACCTT
GTTAAAAAAATGTATGAATGCTCCCTATGGTTTGATTTTATTTTGTGGGCCAACAGGGAGTGGTAAAAGTACTTTCATGC
ATGCTATTTTAAATGAGTTTGACCAAAATAAAAAAATCATTACTCTAGAAGATCCCATAGAATACAAGCTTAAACATGCT
CAGCAAATTTTGTTAAATTCTAAAACCGGCTTTGACTTTTACAAAGCTTTAAGAGCGGTTTTAAGGCAAGATCCTGATGT
GATTATGGTGGGTGAAATTAGAGATGAGGAGAGTTTGGATATTGTTTTAAAAGCTTCCCTAAGTGGACATTTGGTTTTGA
GTACCTTGCATACTAATGGTGCTATAGAAGCTATTTTTAGAATGAAGCATATGGGTGCAAAAGAATATTTAATAGCTTAT
GCGCTTAATTTGATCATAGCCCAGCGCTTGGTAAGAAAACTATGTGAATGTAAAGAAGCTAGCGATGAAAAATTTCATTT
TCAAAACCAAGTTTTTGAAGGAAAATTTTATAAAGCAAAGGGTTGTGTTAAGTGTATGTATAGTGGATATAAAGGACGCT
TAATGGTGGTTGAATTTTTGTTTTTAGATCATAATTTAAAAAGTATGATAGAAAATAATGCAAATTATGAAAATATTTTA
ACTTATGCTTTAAAAAAAGGCTTTTTAACTTTAGGTAGGGATGCTTTGGAAAAAGTTAAGCTTGGTTTGACAAGTGTAGA
TGAGCTAAGAAAGATTGGTTTTTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(2-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

52.26

100

0.523
  pilB Legionella pneumophila strain ERS1305867

39.946

100

0.415
  pilB/pilB1 Synechocystis sp. PCC 6803

38.058

100

0.41
  pilB Vibrio campbellii strain DS40M4

38.462

100

0.395
  pilB Vibrio cholerae strain A1552

38.889

100

0.395
  pilB Vibrio parahaemolyticus RIMD 2210633

38.997

100

0.395
  pilB Acinetobacter baylyi ADP1

37.912

100

0.39
  pilF Neisseria gonorrhoeae MS11

37.845

100

0.387
  pilF Thermus thermophilus HB27

37.709

100

0.381
  pilB Haemophilus influenzae Rd KW20

37.746

100

0.379
  pilB Acinetobacter baumannii D1279779

36.538

100

0.376
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.565

100

0.373
  pilB Haemophilus influenzae 86-028NP

37.183

100

0.373

Multiple sequence alignment