Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACK3CJ_RS05035 | Genome accession | NZ_CP176580 |
| Coordinates | 1078793..1080022 (-) | Length | 409 a.a. |
| NCBI ID | WP_409525334.1 | Uniprot ID | - |
| Organism | Nitrincola sp. WZQS7-5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1073793..1085022
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK3CJ_RS05015 | - | 1074026..1075024 (+) | 999 | WP_409525329.1 | iron ABC transporter substrate-binding protein | - |
| ACK3CJ_RS05020 | - | 1075214..1076806 (+) | 1593 | WP_409525331.1 | ABC transporter permease | - |
| ACK3CJ_RS05025 | - | 1076803..1077882 (+) | 1080 | WP_409525332.1 | ABC transporter ATP-binding protein | - |
| ACK3CJ_RS05030 | pilD | 1077898..1078767 (-) | 870 | WP_409525333.1 | prepilin peptidase | Machinery gene |
| ACK3CJ_RS05035 | pilC | 1078793..1080022 (-) | 1230 | WP_409525334.1 | type II secretion system F family protein | Machinery gene |
| ACK3CJ_RS05040 | pilB | 1080041..1081756 (-) | 1716 | WP_409525335.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACK3CJ_RS05045 | - | 1082030..1083658 (+) | 1629 | WP_409525336.1 | sensor histidine kinase | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 44423.10 Da Isoelectric Point: 9.5616
>NTDB_id=1081048 ACK3CJ_RS05035 WP_409525334.1 1078793..1080022(-) (pilC) [Nitrincola sp. WZQS7-5]
MATAVKEKKKVTYAWEGKDKSGNKSKGKIDAENIAMAKAHLRKQGINPKRVAKERSISFLSSKNKPIKPLDIAFFTRQMA
TMMKSGVPLLQGLEIVANGCEKTKLKELIYEVRNDVNGGTDLSTALKRHPKYFDDLFCSLVEAGEQSGALETMLDRIAEY
KEKIESLKAKIKKAMTYPAAVVVVGIAVSAILLVKVVPQFQDIFQSFGADLPAFTLFVIGLSEFAQSYWFFALIGMVAFG
FGFSKMMEKSQKFSDGVDRFVLKIPVLGEILQKAAIARFARTLSTTFAAGVPLVTALDSAAGAAGNVVYRTSIIQIRNGV
STGQSLQNAVNMTGVYPVMVTQMIAIGEEAGSLDAMLDKIASFYEEEVDNAVDNLSSLLEPLIMVVLGVLVGGLVIAMYL
PIFQLGNVV
MATAVKEKKKVTYAWEGKDKSGNKSKGKIDAENIAMAKAHLRKQGINPKRVAKERSISFLSSKNKPIKPLDIAFFTRQMA
TMMKSGVPLLQGLEIVANGCEKTKLKELIYEVRNDVNGGTDLSTALKRHPKYFDDLFCSLVEAGEQSGALETMLDRIAEY
KEKIESLKAKIKKAMTYPAAVVVVGIAVSAILLVKVVPQFQDIFQSFGADLPAFTLFVIGLSEFAQSYWFFALIGMVAFG
FGFSKMMEKSQKFSDGVDRFVLKIPVLGEILQKAAIARFARTLSTTFAAGVPLVTALDSAAGAAGNVVYRTSIIQIRNGV
STGQSLQNAVNMTGVYPVMVTQMIAIGEEAGSLDAMLDKIASFYEEEVDNAVDNLSSLLEPLIMVVLGVLVGGLVIAMYL
PIFQLGNVV
Nucleotide
Download Length: 1230 bp
>NTDB_id=1081048 ACK3CJ_RS05035 WP_409525334.1 1078793..1080022(-) (pilC) [Nitrincola sp. WZQS7-5]
ATGGCTACAGCAGTTAAAGAGAAGAAAAAGGTCACTTACGCCTGGGAAGGCAAAGACAAAAGCGGCAACAAGAGCAAGGG
CAAGATCGACGCCGAAAATATTGCCATGGCCAAGGCCCACCTGCGCAAGCAGGGGATCAATCCAAAAAGGGTAGCCAAAG
AGCGCAGCATCAGTTTTTTAAGCAGTAAGAATAAGCCGATCAAGCCACTGGATATCGCATTCTTTACCCGCCAGATGGCC
ACCATGATGAAATCGGGTGTACCGCTGCTGCAAGGGCTGGAGATCGTAGCCAATGGCTGCGAGAAAACCAAGCTTAAAGA
GCTTATTTACGAAGTGCGTAACGATGTCAACGGTGGTACTGATCTGTCCACCGCGCTGAAAAGACACCCCAAGTATTTTG
ATGATCTCTTCTGCTCGCTGGTAGAGGCCGGTGAACAATCCGGTGCGCTGGAAACCATGCTCGATCGCATCGCCGAATAT
AAGGAAAAGATCGAATCACTGAAAGCCAAGATCAAAAAGGCAATGACCTACCCTGCTGCAGTTGTGGTGGTGGGTATTGC
GGTGTCAGCAATCTTGCTGGTCAAAGTGGTCCCTCAGTTTCAGGATATTTTCCAGAGTTTTGGTGCTGACCTACCTGCAT
TTACGCTTTTCGTGATTGGCTTATCGGAATTCGCACAGTCCTATTGGTTTTTTGCTCTGATCGGAATGGTAGCCTTTGGC
TTTGGCTTTTCGAAGATGATGGAGAAGTCGCAGAAATTTTCAGATGGCGTCGACCGATTTGTTCTTAAAATTCCAGTCCT
TGGGGAGATTCTTCAAAAGGCTGCCATTGCCCGCTTTGCCCGAACCCTATCCACAACCTTTGCCGCCGGCGTGCCGTTGG
TGACAGCGCTGGATTCGGCTGCCGGGGCTGCAGGAAACGTGGTATATCGCACCTCCATCATCCAGATACGTAACGGCGTA
TCCACCGGTCAGTCGCTACAGAATGCGGTAAACATGACCGGCGTTTATCCGGTGATGGTCACCCAGATGATCGCCATTGG
TGAGGAAGCGGGTTCGCTGGATGCGATGCTGGACAAGATCGCCAGCTTTTATGAAGAGGAGGTTGATAACGCCGTCGATA
ACCTCTCCAGCCTGCTGGAACCTTTGATCATGGTGGTGCTGGGTGTTCTGGTTGGTGGTCTGGTTATTGCCATGTACCTG
CCGATATTCCAGCTGGGTAACGTAGTGTAA
ATGGCTACAGCAGTTAAAGAGAAGAAAAAGGTCACTTACGCCTGGGAAGGCAAAGACAAAAGCGGCAACAAGAGCAAGGG
CAAGATCGACGCCGAAAATATTGCCATGGCCAAGGCCCACCTGCGCAAGCAGGGGATCAATCCAAAAAGGGTAGCCAAAG
AGCGCAGCATCAGTTTTTTAAGCAGTAAGAATAAGCCGATCAAGCCACTGGATATCGCATTCTTTACCCGCCAGATGGCC
ACCATGATGAAATCGGGTGTACCGCTGCTGCAAGGGCTGGAGATCGTAGCCAATGGCTGCGAGAAAACCAAGCTTAAAGA
GCTTATTTACGAAGTGCGTAACGATGTCAACGGTGGTACTGATCTGTCCACCGCGCTGAAAAGACACCCCAAGTATTTTG
ATGATCTCTTCTGCTCGCTGGTAGAGGCCGGTGAACAATCCGGTGCGCTGGAAACCATGCTCGATCGCATCGCCGAATAT
AAGGAAAAGATCGAATCACTGAAAGCCAAGATCAAAAAGGCAATGACCTACCCTGCTGCAGTTGTGGTGGTGGGTATTGC
GGTGTCAGCAATCTTGCTGGTCAAAGTGGTCCCTCAGTTTCAGGATATTTTCCAGAGTTTTGGTGCTGACCTACCTGCAT
TTACGCTTTTCGTGATTGGCTTATCGGAATTCGCACAGTCCTATTGGTTTTTTGCTCTGATCGGAATGGTAGCCTTTGGC
TTTGGCTTTTCGAAGATGATGGAGAAGTCGCAGAAATTTTCAGATGGCGTCGACCGATTTGTTCTTAAAATTCCAGTCCT
TGGGGAGATTCTTCAAAAGGCTGCCATTGCCCGCTTTGCCCGAACCCTATCCACAACCTTTGCCGCCGGCGTGCCGTTGG
TGACAGCGCTGGATTCGGCTGCCGGGGCTGCAGGAAACGTGGTATATCGCACCTCCATCATCCAGATACGTAACGGCGTA
TCCACCGGTCAGTCGCTACAGAATGCGGTAAACATGACCGGCGTTTATCCGGTGATGGTCACCCAGATGATCGCCATTGG
TGAGGAAGCGGGTTCGCTGGATGCGATGCTGGACAAGATCGCCAGCTTTTATGAAGAGGAGGTTGATAACGCCGTCGATA
ACCTCTCCAGCCTGCTGGAACCTTTGATCATGGTGGTGCTGGGTGTTCTGGTTGGTGGTCTGGTTATTGCCATGTACCTG
CCGATATTCCAGCTGGGTAACGTAGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
57.635 |
99.267 |
0.572 |
| pilC | Acinetobacter baumannii D1279779 |
56.533 |
97.311 |
0.55 |
| pilC | Acinetobacter baylyi ADP1 |
55.919 |
97.066 |
0.543 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.112 |
98.044 |
0.54 |
| pilG | Neisseria gonorrhoeae MS11 |
43.921 |
98.533 |
0.433 |
| pilG | Neisseria meningitidis 44/76-A |
43.424 |
98.533 |
0.428 |
| pilC | Vibrio campbellii strain DS40M4 |
43.577 |
97.066 |
0.423 |
| pilC | Vibrio cholerae strain A1552 |
42.317 |
97.066 |
0.411 |
| pilC | Thermus thermophilus HB27 |
38.903 |
98.044 |
0.381 |