Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | ACK3CJ_RS05040 | Genome accession | NZ_CP176580 |
| Coordinates | 1080041..1081756 (-) | Length | 571 a.a. |
| NCBI ID | WP_409525335.1 | Uniprot ID | - |
| Organism | Nitrincola sp. WZQS7-5 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1075041..1086756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK3CJ_RS05020 | - | 1075214..1076806 (+) | 1593 | WP_409525331.1 | ABC transporter permease | - |
| ACK3CJ_RS05025 | - | 1076803..1077882 (+) | 1080 | WP_409525332.1 | ABC transporter ATP-binding protein | - |
| ACK3CJ_RS05030 | pilD | 1077898..1078767 (-) | 870 | WP_409525333.1 | prepilin peptidase | Machinery gene |
| ACK3CJ_RS05035 | pilC | 1078793..1080022 (-) | 1230 | WP_409525334.1 | type II secretion system F family protein | Machinery gene |
| ACK3CJ_RS05040 | pilB | 1080041..1081756 (-) | 1716 | WP_409525335.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACK3CJ_RS05045 | - | 1082030..1083658 (+) | 1629 | WP_409525336.1 | sensor histidine kinase | - |
| ACK3CJ_RS05050 | pilR | 1083655..1085073 (+) | 1419 | WP_409525337.1 | sigma-54-dependent transcriptional regulator | Regulator |
| ACK3CJ_RS05055 | comP | 1085428..1085826 (+) | 399 | WP_409525338.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 571 a.a. Molecular weight: 62905.11 Da Isoelectric Point: 5.7138
>NTDB_id=1081049 ACK3CJ_RS05040 WP_409525335.1 1080041..1081756(-) (pilB) [Nitrincola sp. WZQS7-5]
MTQGVQPLSGLAKRLVQDGALSAEVAADAVAKSRQEKEPFVSYIIKQRLISAHRAASAASEEFGLPLLDLDTIPGDTLPK
GLVAESLINKHQMLPLMKRDNRLYVAVADPTNMQGVDEIKFHTGVTTEVVIVEQDKLAHKLEKYLDEQSDALGELDDADL
DNIDIDDGSTKREEEQTAEDAASDAPIVRFINKVLMDAIKTGASDIHFEPYEKTYRVRCRIDGILQVVHKPPLNLASRLG
ARLKVMSQMDISERRMPQDGRIKLKISKNRSIDFRVNSLPTLWGEKIVLRILDPGSAKIGVEALGFEPDQREIYLKTLDQ
PQGMILVTGPTGSGKTVTLYTGLNILNNSERNISTAEDPVEINMDGINQVHVNNKVGLTFAEALRAFLRQDPDVVMVGEI
RDLETAEIAIKAAQTGHMVLSTLHTNSAPETLTRLRNMGVPAFNVATSVSLIIAQRLGRRLCESCKRPSSVPEATLLEEG
FTADQIPNLHLFEANHEGCQKCNKGYKGRVGIYEMLAMSPEIAECIMENGTSLDILRVARQQGFKTLRQSALIKVASGVT
SLEEMNRVIKT
MTQGVQPLSGLAKRLVQDGALSAEVAADAVAKSRQEKEPFVSYIIKQRLISAHRAASAASEEFGLPLLDLDTIPGDTLPK
GLVAESLINKHQMLPLMKRDNRLYVAVADPTNMQGVDEIKFHTGVTTEVVIVEQDKLAHKLEKYLDEQSDALGELDDADL
DNIDIDDGSTKREEEQTAEDAASDAPIVRFINKVLMDAIKTGASDIHFEPYEKTYRVRCRIDGILQVVHKPPLNLASRLG
ARLKVMSQMDISERRMPQDGRIKLKISKNRSIDFRVNSLPTLWGEKIVLRILDPGSAKIGVEALGFEPDQREIYLKTLDQ
PQGMILVTGPTGSGKTVTLYTGLNILNNSERNISTAEDPVEINMDGINQVHVNNKVGLTFAEALRAFLRQDPDVVMVGEI
RDLETAEIAIKAAQTGHMVLSTLHTNSAPETLTRLRNMGVPAFNVATSVSLIIAQRLGRRLCESCKRPSSVPEATLLEEG
FTADQIPNLHLFEANHEGCQKCNKGYKGRVGIYEMLAMSPEIAECIMENGTSLDILRVARQQGFKTLRQSALIKVASGVT
SLEEMNRVIKT
Nucleotide
Download Length: 1716 bp
>NTDB_id=1081049 ACK3CJ_RS05040 WP_409525335.1 1080041..1081756(-) (pilB) [Nitrincola sp. WZQS7-5]
GTGACACAAGGCGTTCAACCCTTAAGTGGACTGGCCAAGAGACTGGTGCAGGATGGGGCCCTTTCAGCCGAAGTCGCAGC
TGATGCCGTGGCCAAATCCCGTCAGGAAAAAGAGCCGTTTGTCAGCTATATCATCAAACAGCGCCTGATCAGTGCTCACC
GTGCCGCATCTGCCGCTTCGGAAGAGTTTGGCCTGCCTCTGCTTGATCTTGATACCATCCCCGGCGACACACTCCCCAAA
GGCCTGGTGGCCGAATCTCTGATTAACAAACATCAGATGCTACCTCTGATGAAGCGTGACAACCGCCTTTATGTCGCGGT
GGCCGATCCGACCAATATGCAGGGTGTGGATGAGATCAAGTTCCACACTGGCGTAACTACCGAAGTGGTCATCGTTGAGC
AGGATAAGCTGGCACACAAGCTTGAGAAATACCTGGATGAGCAGAGCGATGCGCTGGGCGAGCTGGACGATGCCGACCTT
GATAATATTGATATCGATGACGGCTCGACAAAGCGCGAAGAGGAGCAGACCGCCGAGGATGCCGCCAGTGATGCGCCCAT
CGTCAGGTTTATCAACAAAGTATTGATGGATGCGATCAAGACCGGCGCTTCAGATATTCACTTTGAACCTTACGAGAAAA
CCTATCGGGTGCGCTGTCGTATCGACGGGATTCTGCAGGTGGTGCACAAACCCCCGTTGAATCTCGCCTCACGCCTGGGA
GCACGACTCAAAGTGATGTCACAGATGGATATCTCTGAGCGGCGCATGCCTCAGGATGGACGCATCAAACTCAAGATCTC
GAAGAACCGCTCCATCGATTTCCGTGTCAACAGCCTGCCCACCCTTTGGGGTGAGAAGATCGTGCTGCGTATTCTGGACC
CCGGCAGCGCAAAAATCGGCGTGGAGGCACTGGGCTTTGAACCGGATCAGCGGGAAATCTATCTCAAGACGCTGGATCAG
CCTCAGGGGATGATTCTGGTGACGGGCCCGACCGGTTCAGGTAAAACCGTAACTCTCTACACTGGCCTGAATATTCTGAA
CAACTCGGAGCGTAATATTTCCACCGCCGAGGACCCCGTCGAAATCAATATGGATGGGATCAACCAGGTACATGTGAATA
ACAAGGTAGGCCTGACCTTTGCTGAGGCGCTGCGTGCGTTTTTGCGTCAGGACCCCGATGTAGTGATGGTGGGTGAGATC
CGAGATCTTGAAACCGCCGAAATCGCGATCAAAGCGGCTCAGACCGGTCATATGGTACTGTCGACACTGCATACCAACAG
TGCCCCGGAAACACTGACTCGTCTACGTAATATGGGTGTACCGGCATTTAACGTTGCAACCTCGGTCAGTTTGATCATTG
CTCAGCGCCTTGGCCGACGTTTGTGTGAGTCCTGCAAGAGGCCATCTTCTGTTCCTGAGGCTACACTGTTGGAAGAGGGC
TTTACCGCCGATCAGATCCCCAACCTTCATCTGTTCGAAGCCAATCATGAGGGCTGCCAGAAATGCAACAAGGGATATAA
GGGTCGTGTCGGTATCTATGAGATGCTGGCGATGTCTCCCGAGATCGCCGAATGCATCATGGAGAACGGAACATCATTGG
ATATTCTGCGTGTTGCACGCCAGCAAGGCTTTAAAACCCTGCGCCAATCTGCCCTGATCAAGGTGGCCAGCGGCGTGACC
AGCCTTGAAGAGATGAACCGCGTAATCAAAACCTGA
GTGACACAAGGCGTTCAACCCTTAAGTGGACTGGCCAAGAGACTGGTGCAGGATGGGGCCCTTTCAGCCGAAGTCGCAGC
TGATGCCGTGGCCAAATCCCGTCAGGAAAAAGAGCCGTTTGTCAGCTATATCATCAAACAGCGCCTGATCAGTGCTCACC
GTGCCGCATCTGCCGCTTCGGAAGAGTTTGGCCTGCCTCTGCTTGATCTTGATACCATCCCCGGCGACACACTCCCCAAA
GGCCTGGTGGCCGAATCTCTGATTAACAAACATCAGATGCTACCTCTGATGAAGCGTGACAACCGCCTTTATGTCGCGGT
GGCCGATCCGACCAATATGCAGGGTGTGGATGAGATCAAGTTCCACACTGGCGTAACTACCGAAGTGGTCATCGTTGAGC
AGGATAAGCTGGCACACAAGCTTGAGAAATACCTGGATGAGCAGAGCGATGCGCTGGGCGAGCTGGACGATGCCGACCTT
GATAATATTGATATCGATGACGGCTCGACAAAGCGCGAAGAGGAGCAGACCGCCGAGGATGCCGCCAGTGATGCGCCCAT
CGTCAGGTTTATCAACAAAGTATTGATGGATGCGATCAAGACCGGCGCTTCAGATATTCACTTTGAACCTTACGAGAAAA
CCTATCGGGTGCGCTGTCGTATCGACGGGATTCTGCAGGTGGTGCACAAACCCCCGTTGAATCTCGCCTCACGCCTGGGA
GCACGACTCAAAGTGATGTCACAGATGGATATCTCTGAGCGGCGCATGCCTCAGGATGGACGCATCAAACTCAAGATCTC
GAAGAACCGCTCCATCGATTTCCGTGTCAACAGCCTGCCCACCCTTTGGGGTGAGAAGATCGTGCTGCGTATTCTGGACC
CCGGCAGCGCAAAAATCGGCGTGGAGGCACTGGGCTTTGAACCGGATCAGCGGGAAATCTATCTCAAGACGCTGGATCAG
CCTCAGGGGATGATTCTGGTGACGGGCCCGACCGGTTCAGGTAAAACCGTAACTCTCTACACTGGCCTGAATATTCTGAA
CAACTCGGAGCGTAATATTTCCACCGCCGAGGACCCCGTCGAAATCAATATGGATGGGATCAACCAGGTACATGTGAATA
ACAAGGTAGGCCTGACCTTTGCTGAGGCGCTGCGTGCGTTTTTGCGTCAGGACCCCGATGTAGTGATGGTGGGTGAGATC
CGAGATCTTGAAACCGCCGAAATCGCGATCAAAGCGGCTCAGACCGGTCATATGGTACTGTCGACACTGCATACCAACAG
TGCCCCGGAAACACTGACTCGTCTACGTAATATGGGTGTACCGGCATTTAACGTTGCAACCTCGGTCAGTTTGATCATTG
CTCAGCGCCTTGGCCGACGTTTGTGTGAGTCCTGCAAGAGGCCATCTTCTGTTCCTGAGGCTACACTGTTGGAAGAGGGC
TTTACCGCCGATCAGATCCCCAACCTTCATCTGTTCGAAGCCAATCATGAGGGCTGCCAGAAATGCAACAAGGGATATAA
GGGTCGTGTCGGTATCTATGAGATGCTGGCGATGTCTCCCGAGATCGCCGAATGCATCATGGAGAACGGAACATCATTGG
ATATTCTGCGTGTTGCACGCCAGCAAGGCTTTAAAACCCTGCGCCAATCTGCCCTGATCAAGGTGGCCAGCGGCGTGACC
AGCCTTGAAGAGATGAACCGCGTAATCAAAACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
57.447 |
98.774 |
0.567 |
| pilB | Acinetobacter baylyi ADP1 |
57.194 |
98.599 |
0.564 |
| pilB | Legionella pneumophila strain ERS1305867 |
54.336 |
98.949 |
0.538 |
| pilB | Vibrio cholerae strain A1552 |
52.987 |
90.893 |
0.482 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
47.527 |
99.124 |
0.471 |
| pilB | Vibrio campbellii strain DS40M4 |
46.737 |
99.299 |
0.464 |
| pilF | Neisseria gonorrhoeae MS11 |
47.321 |
98.074 |
0.464 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
40.655 |
90.893 |
0.37 |