Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACKUBV_RS11700 Genome accession   NZ_CP176357
Coordinates   2478410..2479522 (+) Length   370 a.a.
NCBI ID   WP_069535746.1    Uniprot ID   A0AA47JGA1
Organism   Vibrio parahaemolyticus strain AG1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2473410..2484522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUBV_RS11680 (ACKUBV_11680) rsmB 2474330..2475613 (-) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACKUBV_RS11685 (ACKUBV_11685) fmt 2475694..2476641 (-) 948 WP_069535745.1 methionyl-tRNA formyltransferase -
  ACKUBV_RS11690 (ACKUBV_11690) def 2476675..2477193 (-) 519 WP_005461416.1 peptide deformylase -
  ACKUBV_RS11695 (ACKUBV_11695) - 2477332..2478426 (+) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  ACKUBV_RS11700 (ACKUBV_11700) dprA 2478410..2479522 (+) 1113 WP_069535746.1 DNA-processing protein DprA Machinery gene
  ACKUBV_RS11705 (ACKUBV_11705) - 2479525..2480004 (+) 480 WP_005461440.1 DUF494 family protein -
  ACKUBV_RS11710 (ACKUBV_11710) - 2480083..2480652 (+) 570 WP_069535747.1 type I DNA topoisomerase -
  ACKUBV_RS11715 (ACKUBV_11715) - 2480716..2481849 (-) 1134 WP_069535748.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACKUBV_RS11720 (ACKUBV_11720) purE 2481854..2482339 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACKUBV_RS11725 (ACKUBV_11725) - 2482539..2483096 (+) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  ACKUBV_RS11730 (ACKUBV_11730) hemF 2483144..2484061 (+) 918 WP_017449330.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39927.55 Da        Isoelectric Point: 6.4144

>NTDB_id=1079714 ACKUBV_RS11700 WP_069535746.1 2478410..2479522(+) (dprA) [Vibrio parahaemolyticus strain AG1]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGASLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1079714 ACKUBV_RS11700 WP_069535746.1 2478410..2479522(+) (dprA) [Vibrio parahaemolyticus strain AG1]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGAGGTAAGACGATAGCTGTGCTGGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCAGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.784

100

0.838
  dprA Vibrio cholerae strain A1552

58.378

100

0.584
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376

Multiple sequence alignment