Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACKUBV_RS06935 Genome accession   NZ_CP176357
Coordinates   1475318..1475602 (-) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AG1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1474676..1484646 1475318..1475602 within 0


Gene organization within MGE regions


Location: 1474676..1484646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUBV_RS06930 (ACKUBV_06930) rrtA 1474676..1475227 (+) 552 WP_069536296.1 rhombosortase -
  ACKUBV_RS06935 (ACKUBV_06935) comEA 1475318..1475602 (-) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  ACKUBV_RS06940 (ACKUBV_06940) ppiD 1475753..1477612 (-) 1860 WP_069536297.1 peptidylprolyl isomerase -
  ACKUBV_RS06945 (ACKUBV_06945) - 1477812..1478084 (-) 273 WP_005382341.1 HU family DNA-binding protein -
  ACKUBV_RS06950 (ACKUBV_06950) lon 1478276..1480629 (-) 2354 Protein_1374 endopeptidase La -
  ACKUBV_RS06955 (ACKUBV_06955) clpX 1480761..1482041 (-) 1281 WP_005460618.1 ATP-dependent protease ATP-binding subunit ClpX -
  ACKUBV_RS06960 (ACKUBV_06960) clpP 1482113..1482739 (-) 627 WP_005460620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  ACKUBV_RS06965 (ACKUBV_06965) tig 1482845..1484149 (-) 1305 WP_005460612.1 trigger factor -
  ACKUBV_RS06970 (ACKUBV_06970) - 1484443..1484628 (-) 186 WP_020904052.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=1079704 ACKUBV_RS06935 WP_021449594.1 1475318..1475602(-) (comEA) [Vibrio parahaemolyticus strain AG1]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1079704 ACKUBV_RS06935 WP_021449594.1 1475318..1475602(-) (comEA) [Vibrio parahaemolyticus strain AG1]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362

Multiple sequence alignment