Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACKN8R_RS06400 | Genome accession | NZ_CP176031 |
| Coordinates | 1348905..1349189 (+) | Length | 94 a.a. |
| NCBI ID | WP_021449594.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain L2171 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1343905..1354189
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKN8R_RS06390 (ACKN8R_06390) | - | 1346423..1346695 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| ACKN8R_RS06395 (ACKN8R_06395) | ppiD | 1346895..1348754 (+) | 1860 | WP_031821860.1 | peptidylprolyl isomerase | - |
| ACKN8R_RS06400 (ACKN8R_06400) | comEA | 1348905..1349189 (+) | 285 | WP_021449594.1 | ComEA family DNA-binding protein | Machinery gene |
| ACKN8R_RS06405 (ACKN8R_06405) | rrtA | 1349280..1349831 (-) | 552 | WP_180800117.1 | rhombosortase | - |
| ACKN8R_RS06410 (ACKN8R_06410) | - | 1349835..1350449 (+) | 615 | WP_005456903.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACKN8R_RS06415 (ACKN8R_06415) | - | 1350456..1351790 (-) | 1335 | WP_041954079.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACKN8R_RS06420 (ACKN8R_06420) | yfbR | 1351803..1352387 (-) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| ACKN8R_RS06425 (ACKN8R_06425) | - | 1352479..1353693 (-) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10249.91 Da Isoelectric Point: 5.8425
>NTDB_id=1079403 ACKN8R_RS06400 WP_021449594.1 1348905..1349189(+) (comEA) [Vibrio parahaemolyticus strain L2171]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=1079403 ACKN8R_RS06400 WP_021449594.1 1348905..1349189(+) (comEA) [Vibrio parahaemolyticus strain L2171]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| comEA | Vibrio campbellii strain DS40M4 |
77.895 |
100 |
0.787 |
| comEA | Vibrio cholerae C6706 |
62.766 |
100 |
0.628 |
| comEA | Vibrio cholerae strain A1552 |
62.766 |
100 |
0.628 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |