Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACJRPX_RS01195 Genome accession   NZ_CP174475
Coordinates   268389..269612 (+) Length   407 a.a.
NCBI ID   WP_078306348.1    Uniprot ID   A0A1T0CJR3
Organism   Moraxella lincolnii strain CCUG 52988     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263389..274612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJRPX_RS01165 (ACJRPX_01165) rimP 263621..264115 (-) 495 WP_078306352.1 ribosome maturation factor RimP -
  ACJRPX_RS01180 (ACJRPX_01180) secG 264753..265064 (-) 312 WP_078306351.1 preprotein translocase subunit SecG -
  ACJRPX_RS01185 (ACJRPX_01185) tpiA 265176..265997 (-) 822 WP_078306350.1 triose-phosphate isomerase -
  ACJRPX_RS01190 (ACJRPX_01190) pilB 266508..268211 (+) 1704 WP_078306349.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACJRPX_RS01195 (ACJRPX_01195) pilC 268389..269612 (+) 1224 WP_078306348.1 type II secretion system F family protein Machinery gene
  ACJRPX_RS01200 (ACJRPX_01200) pilD 269624..270529 (+) 906 WP_205760089.1 prepilin peptidase Machinery gene
  ACJRPX_RS01205 (ACJRPX_01205) coaE 270630..271247 (+) 618 WP_078306439.1 dephospho-CoA kinase -
  ACJRPX_RS01210 (ACJRPX_01210) rlmB 271259..272092 (-) 834 WP_078306347.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACJRPX_RS01215 (ACJRPX_01215) - 272153..272488 (-) 336 WP_078306346.1 pyrimidine/purine nucleoside phosphorylase -
  ACJRPX_RS01220 (ACJRPX_01220) recN 272863..274548 (+) 1686 WP_078306345.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44818.82 Da        Isoelectric Point: 9.8016

>NTDB_id=1077254 ACJRPX_RS01195 WP_078306348.1 268389..269612(+) (pilC) [Moraxella lincolnii strain CCUG 52988]
MATAKTEMLLDFTYSGTNRRGQQVKGETTSRNIELAKAQLRKQGISVSSIKKKPKPLFQMKKKIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADSLENPTMKDLVLELKADIESGTTFAEALRRHPRYFDDLFCSLVESGEQAGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVIVVAIVVTIILLVKVVPVFAELFGSFGAELPAFTQMVVNMSEWMKKWWFILIIGIGATVIGF
SEAKKRSKKFRDLLDRIALKAPVFGKIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQIKNDVSTG
QQLQFAMRTTNLFPSMAIQMVGIGEEAGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAFLGVVIGGLVVAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1077254 ACJRPX_RS01195 WP_078306348.1 268389..269612(+) (pilC) [Moraxella lincolnii strain CCUG 52988]
ATGGCAACTGCAAAGACTGAAATGTTACTAGATTTTACCTACAGTGGTACTAACCGCCGTGGGCAACAAGTCAAAGGTGA
GACCACCAGTCGCAATATAGAGCTTGCTAAAGCCCAATTACGTAAACAAGGCATTAGTGTTAGTAGCATTAAGAAAAAGC
CCAAACCACTTTTTCAAATGAAAAAGAAAATCAAGGCGATTGACATTGCTATTTTTGTGCGACAATTAGCAACGATGATG
AAAGCGGGTGTGCCATTGACGCAGTCATTTGAAATTGTGGCAGATTCACTTGAAAACCCAACCATGAAAGATTTGGTCTT
AGAGCTTAAAGCAGACATTGAATCTGGAACCACATTTGCTGAGGCTTTGCGTCGCCATCCTCGCTATTTTGATGATTTGT
TCTGTTCATTGGTGGAGTCAGGTGAGCAAGCAGGTGCGTTAGAAACCATGCTAGAGAGGGTTGCCACTTATAAAGAAAAA
AGTGAGCTACTTAAAGCGAAAATTAAAAAAGCGATGAAATATCCCATCGCCGTCATCGTGGTTGCCATCGTTGTGACCAT
CATTTTGTTGGTAAAGGTGGTGCCTGTGTTTGCTGAGCTATTTGGTTCTTTTGGAGCTGAACTTCCAGCATTTACCCAAA
TGGTGGTGAATATGTCCGAATGGATGAAAAAATGGTGGTTTATTTTAATTATTGGCATTGGTGCGACTGTCATTGGTTTT
TCTGAAGCCAAAAAACGCAGTAAAAAATTCCGAGATCTTTTAGATAGGATTGCTTTAAAAGCCCCTGTTTTTGGAAAGAT
TGCTTATCAGGCCGTCATTGCTCGCTTTGCTCGCACTTTATCAACCACGTTTGCTGCCGGTGTGCCCTTAATTGACGCCT
TAGATTCAACAGCGGGGGCAACCAATAATGTGGTGTTTTATAATGCCACTCAACAAATTAAAAATGATGTCTCAACCGGT
CAACAATTACAGTTTGCCATGCGTACCACCAATTTATTCCCCAGCATGGCCATTCAAATGGTGGGTATTGGTGAGGAAGC
TGGTAGTTTAGAAGAAATGTTAGATAAGGTTGCCACCTATTATGAAAATGAGGTGGATAATGCCGTAGATGGTTTGACCA
GCTTGATGGAACCAATGATTATGGCATTCTTAGGTGTGGTAATTGGTGGTTTGGTTGTTGCCATGTACTTACCCATATTT
CAAATGGGCTCAGTTGTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T0CJR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

69.608

100

0.698
  pilC Acinetobacter baylyi ADP1

68.382

100

0.686
  pilC Pseudomonas stutzeri DSM 10701

62.532

97.052

0.607
  pilC Legionella pneumophila strain ERS1305867

55.89

98.034

0.548
  pilG Neisseria gonorrhoeae MS11

44.192

97.297

0.43
  pilG Neisseria meningitidis 44/76-A

43.939

97.297

0.428
  pilC Vibrio cholerae strain A1552

41.912

100

0.42
  pilC Vibrio campbellii strain DS40M4

39.75

98.28

0.391

Multiple sequence alignment