Detailed information NTG1077255

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACJRPX_RS01200
• Genome accession: NZ_CP174475
• Coordinates: 269624..270529 (+)
• Length: 301 a.a.
• NCBI ID: WP_205760089.1
• Uniprot ID: -
• Organism: Moraxella lincolnii strain CCUG 52988
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 264624..275529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJRPX_RS01180 (ACJRPX_01180)	secG	264753..265064 (-)	312	WP_078306351.1	preprotein translocase subunit SecG	-
ACJRPX_RS01185 (ACJRPX_01185)	tpiA	265176..265997 (-)	822	WP_078306350.1	triose-phosphate isomerase	-
ACJRPX_RS01190 (ACJRPX_01190)	pilB	266508..268211 (+)	1704	WP_078306349.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACJRPX_RS01195 (ACJRPX_01195)	pilC	268389..269612 (+)	1224	WP_078306348.1	type II secretion system F family protein	Machinery gene
ACJRPX_RS01200 (ACJRPX_01200)	pilD	269624..270529 (+)	906	WP_205760089.1	prepilin peptidase	Machinery gene
ACJRPX_RS01205 (ACJRPX_01205)	coaE	270630..271247 (+)	618	WP_078306439.1	dephospho-CoA kinase	-
ACJRPX_RS01210 (ACJRPX_01210)	rlmB	271259..272092 (-)	834	WP_078306347.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACJRPX_RS01215 (ACJRPX_01215)	-	272153..272488 (-)	336	WP_078306346.1	pyrimidine/purine nucleoside phosphorylase	-
ACJRPX_RS01220 (ACJRPX_01220)	recN	272863..274548 (+)	1686	WP_078306345.1	DNA repair protein RecN	-
ACJRPX_RS01225 (ACJRPX_01225)	-	274653..275261 (+)	609	WP_276206611.1	YqgE/AlgH family protein	-

Sequence

Protein

• Length: 301 a.a.
• Molecular weight: 33798.39 Da
• Isoelectric Point: 7.0714

>NTDB_id=1077255 ACJRPX_RS01200 WP_205760089.1 269624..270529(+) (pilD) [Moraxella lincolnii strain CCUG 52988]
MFIEPLQQLQQNLWLALTVFAVLGLCVGSFLNVVIHRMPLMMRYEWRHEIAEFLSYQEDIDEPVKMSVSQAVAKDTRMTL
SLPASRCPHCEHRIRWYENIPVISWLMLRGKCGDCHAPISIRYPLVEIITAVLSVLVIHQFGVSIQGICALMFVWILIAL
TGIDFDTQYLPDRLVYPLMGIGLAVNSFDVFASPITAIWGLLFGFLSLWVVAKGFYLIMKKQGMGQGDFKLLAALGAWLG
VSMLPFIIFTSALLGSMIGLVLMKVHGESRPFAFGPYLAMAGILALLFGNDILNWYLSLYA

Nucleotide

• Length: 906 bp

>NTDB_id=1077255 ACJRPX_RS01200 WP_205760089.1 269624..270529(+) (pilD) [Moraxella lincolnii strain CCUG 52988]
ATGTTTATCGAGCCATTACAGCAACTGCAACAAAACCTTTGGTTGGCATTAACCGTTTTTGCGGTATTGGGGTTGTGTGT
GGGTAGTTTTTTGAATGTTGTGATTCACCGCATGCCTTTGATGATGCGATACGAATGGCGGCATGAGATTGCGGAGTTTT
TATCTTACCAAGAAGACATTGACGAGCCAGTCAAAATGTCGGTATCTCAAGCAGTTGCCAAGGACACTCGCATGACCTTG
TCATTGCCTGCTTCACGTTGTCCACATTGTGAGCACCGTATCCGTTGGTATGAAAACATTCCTGTCATCAGCTGGCTGAT
GTTGCGTGGCAAATGTGGCGATTGCCATGCTCCCATCTCTATCCGTTATCCATTGGTTGAGATCATCACGGCAGTGCTAT
CGGTGCTGGTCATTCATCAGTTTGGGGTGTCAATACAAGGCATTTGTGCTTTGATGTTTGTTTGGATACTCATCGCTTTA
ACAGGCATTGATTTTGATACCCAGTATTTGCCAGATAGATTGGTGTATCCGCTGATGGGTATTGGCTTGGCAGTCAATTC
ATTTGATGTGTTTGCGTCGCCCATAACTGCCATTTGGGGGTTGTTATTTGGCTTCTTATCTTTATGGGTAGTTGCCAAGG
GATTTTATTTAATAATGAAAAAGCAAGGCATGGGGCAAGGGGATTTTAAGCTTCTTGCTGCTTTAGGTGCATGGCTTGGA
GTAAGTATGCTGCCGTTCATTATTTTTACATCAGCATTGCTAGGCAGCATGATTGGGCTGGTATTGATGAAAGTTCATGG
AGAGAGTCGTCCATTTGCATTTGGTCCTTATTTGGCAATGGCAGGGATATTGGCTTTGTTATTTGGTAATGATATTTTAA
ATTGGTATTTATCCTTATATGCCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-141)

• Type IV leader peptidase family (Peptidase_A24) (152-260)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.389	95.681	0.492
pilD	Acinetobacter nosocomialis M2	51.042	95.681	0.488
pilD	Vibrio campbellii strain DS40M4	45.973	99.003	0.455
pilD	Vibrio cholerae strain A1552	45.578	97.674	0.445
pilD	Neisseria gonorrhoeae MS11	43.007	95.017	0.409