Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACJD0W_RS12360 Genome accession   NZ_CP174456
Coordinates   2737908..2739131 (+) Length   407 a.a.
NCBI ID   WP_071235305.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain BD182406     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2732908..2744131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS12340 ampD 2733990..2734541 (-) 552 WP_282065240.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACJD0W_RS12345 nadC 2734634..2735521 (+) 888 WP_407832468.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACJD0W_RS12350 - 2735749..2736207 (+) 459 WP_045393855.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACJD0W_RS12355 pilB 2736207..2737892 (+) 1686 WP_010450185.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACJD0W_RS12360 pilC 2737908..2739131 (+) 1224 WP_071235305.1 type II secretion system F family protein Machinery gene
  ACJD0W_RS12365 pilD 2739202..2740071 (+) 870 WP_071235304.1 A24 family peptidase Machinery gene
  ACJD0W_RS12370 coaE 2740072..2740686 (+) 615 WP_407832469.1 dephospho-CoA kinase -
  ACJD0W_RS12375 zapD 2740715..2741455 (+) 741 WP_407832470.1 cell division protein ZapD -
  ACJD0W_RS12380 yacG 2741519..2741713 (+) 195 WP_010450195.1 DNA gyrase inhibitor YacG -
  ACJD0W_RS12385 rplS 2742283..2742636 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  ACJD0W_RS12390 trmD 2742678..2743421 (-) 744 WP_010450200.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACJD0W_RS12395 rimM 2743449..2743997 (-) 549 WP_005438038.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45160.32 Da        Isoelectric Point: 10.4164

>NTDB_id=1077125 ACJD0W_RS12360 WP_071235305.1 2737908..2739131(+) (pilC) [Vibrio rotiferianus strain BD182406]
MKVSTPQLKNFRWKGINSSGKQTSGHILALNEVEVRERLDGQHIKVKKLKRSNASVLSKLSNRVKARDITIFTRQITTML
TTGVPIVQALKLVSENHRKAEMKSILLNISKAVEAGTPMSKAMRTSSQHFDPLYTDLIATGEQSGNLDKVFERLATYREK
SEQLRAKVIKALIYPAMVILVALIVSFVMLTKVIPEFQKMFAGFGANLPWFTQQILALSDWVQNWGGIMILGIVGVIISC
KLISNRSPSFHLFLARTSLKTPVLGPVFSKAAIAKFSRTLATSFSSGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIANIYEFEVDNTVDNLSKILEPLIILFLGVVVGSMVAAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1077125 ACJD0W_RS12360 WP_071235305.1 2737908..2739131(+) (pilC) [Vibrio rotiferianus strain BD182406]
ATGAAAGTATCAACACCCCAACTTAAGAACTTCCGCTGGAAAGGCATCAATAGCTCAGGGAAACAAACATCAGGCCATAT
ACTCGCTCTGAATGAGGTCGAGGTTCGCGAAAGACTCGATGGTCAACACATCAAAGTTAAAAAACTGAAAAGAAGCAATG
CTTCTGTCTTATCAAAATTAAGTAACAGAGTTAAAGCCAGAGACATCACGATTTTCACTCGCCAGATTACAACTATGCTG
ACAACCGGTGTTCCTATTGTCCAAGCGCTCAAGTTGGTGTCAGAAAATCACCGCAAAGCGGAAATGAAATCCATACTGTT
GAACATTAGTAAAGCAGTAGAGGCAGGAACCCCCATGTCAAAAGCAATGAGAACCTCAAGCCAGCACTTCGACCCGCTGT
ATACAGATCTCATTGCCACTGGAGAGCAATCCGGTAATTTAGATAAAGTTTTTGAACGCCTCGCTACCTACCGGGAAAAG
AGCGAGCAACTTCGAGCTAAAGTAATCAAGGCTCTGATTTATCCCGCCATGGTGATCTTAGTAGCTCTAATTGTATCTTT
TGTCATGCTTACCAAAGTAATACCTGAGTTCCAAAAAATGTTTGCTGGCTTTGGTGCCAATTTGCCTTGGTTTACCCAAC
AGATCCTAGCCCTATCAGATTGGGTTCAAAATTGGGGAGGGATTATGATTTTAGGAATTGTGGGTGTTATTATTTCATGC
AAGCTAATCAGCAATCGCTCTCCTTCTTTCCATCTATTTTTAGCGCGAACGAGCTTGAAAACCCCAGTCCTAGGACCCGT
TTTTTCGAAAGCAGCAATAGCTAAATTTAGTAGAACACTAGCCACTAGTTTTAGTTCCGGCATTCCGATACTCACGAGTT
TAAAAACCACCTCAAAAACCTCTGGCAACCTACACTATCAACTCGCGATTGAAGAGGTCTATCGTGATACTGCCGCAGGG
ATGCCAATGTACATTGCGATGAGAAACTGCAATGTATTTCCAGAGTTAGTATTGCAAATGGTTATGATTGGCGAAGAATC
CGGAAGGCTTGACGATATGCTCAATAAAATAGCCAATATTTATGAGTTCGAGGTCGACAACACCGTAGATAACTTAAGCA
AAATCTTAGAGCCTTTAATCATCTTATTTTTAGGGGTGGTTGTCGGCAGCATGGTTGCTGCAATGTACTTACCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

80.098

100

0.801
  pilC Vibrio cholerae strain A1552

71

98.28

0.698
  pilC Acinetobacter baumannii D1279779

42.5

98.28

0.418
  pilC Acinetobacter baylyi ADP1

41.31

97.543

0.403
  pilC Legionella pneumophila strain ERS1305867

38.424

99.754

0.383
  pilC Pseudomonas stutzeri DSM 10701

39.394

97.297

0.383
  pilG Neisseria meningitidis 44/76-A

38.596

98.034

0.378
  pilG Neisseria gonorrhoeae MS11

38.346

98.034

0.376

Multiple sequence alignment