Detailed information NTG1077126

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACJD0W_RS12365
• Genome accession: NZ_CP174456
• Coordinates: 2739202..2740071 (+)
• Length: 289 a.a.
• NCBI ID: WP_071235304.1
• Uniprot ID: -
• Organism: Vibrio rotiferianus strain BD182406
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2734202..2745071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJD0W_RS12345	nadC	2734634..2735521 (+)	888	WP_407832468.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACJD0W_RS12350	-	2735749..2736207 (+)	459	WP_045393855.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACJD0W_RS12355	pilB	2736207..2737892 (+)	1686	WP_010450185.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACJD0W_RS12360	pilC	2737908..2739131 (+)	1224	WP_071235305.1	type II secretion system F family protein	Machinery gene
ACJD0W_RS12365	pilD	2739202..2740071 (+)	870	WP_071235304.1	A24 family peptidase	Machinery gene
ACJD0W_RS12370	coaE	2740072..2740686 (+)	615	WP_407832469.1	dephospho-CoA kinase	-
ACJD0W_RS12375	zapD	2740715..2741455 (+)	741	WP_407832470.1	cell division protein ZapD	-
ACJD0W_RS12380	yacG	2741519..2741713 (+)	195	WP_010450195.1	DNA gyrase inhibitor YacG	-
ACJD0W_RS12385	rplS	2742283..2742636 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
ACJD0W_RS12390	trmD	2742678..2743421 (-)	744	WP_010450200.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACJD0W_RS12395	rimM	2743449..2743997 (-)	549	WP_005438038.1	ribosome maturation factor RimM	-
ACJD0W_RS12400	rpsP	2744027..2744275 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32468.58 Da
• Isoelectric Point: 7.5423

>NTDB_id=1077126 ACJD0W_RS12365 WP_071235304.1 2739202..2740071(+) (pilD) [Vibrio rotiferianus strain BD182406]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKDTLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLRGKCHNCQSSISARYPLVELLTAFCSGFIAFHFGFSYFTAALIFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALVGISPVSLQDAVIGAMAGYLCLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1077126 ACJD0W_RS12365 WP_071235304.1 2739202..2740071(+) (pilD) [Vibrio rotiferianus strain BD182406]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACGATTTTTGGTTTGATCGTAGGCAGCTTCCTCAA
CGTTGTTATTTATCGACTACCCAAAATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAGTCATTTCCTGAATACAAGA
TCGAGCCACCAAAAGATACGTTAACGCTAAGTGTGCCGCGTTCATCTTGTCAGCAATGTGGTACACACATCCGCATCAGA
GACAACATCCCTGTGATTAGTTGGCTATTACTCAGAGGTAAATGCCACAACTGCCAGTCTTCTATTAGTGCTCGCTACCC
TCTTGTCGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCCTTTCATTTCGGTTTTAGCTACTTCACTGCGGCCCTTA
TTTTCTTTACCTTTGTACTGATAGCCGCCACATTCATCGACCTAGATACTATGTTGTTGCCGGATCAACTCACGCTGCCA
TTAATGTGGGCAGGTATTGCACTTGCTCTCGTGGGTATAAGCCCTGTTAGCCTGCAAGACGCCGTTATTGGAGCTATGGC
GGGTTACCTCTGCCTCTGGAGTGTCTACTGGGCATTCAAACTGCTAACTGGCAAAGAAGGTATGGGCTACGGTGATTTTA
AACTACTTGCAGCATTAGGAGCTTGGTTAGGTTGGCAATCTTTGCCGATGATCATTTTGCTTTCATCAGTGGTAGGCGTC
ATCTTTGGTCTTATTCAATTGCGTTTGCAGAAGCAAGGCATCGAAAAAGCCTTTCCTTTTGGCCCTTACCTTGCAATCGC
GGGTTGGGTAAGCCTAATTTGGGGCAATCAAATCCTTAACTGGTACTTTACGTCAATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	95.156	100	0.952
pilD	Vibrio cholerae strain A1552	74.653	99.654	0.744
pilD	Acinetobacter baumannii D1279779	51.46	94.81	0.488
pilD	Acinetobacter nosocomialis M2	51.095	94.81	0.484
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443