Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACI703_RS04545 Genome accession   NZ_CP173765
Coordinates   1024504..1025763 (-) Length   419 a.a.
NCBI ID   WP_313207607.1    Uniprot ID   -
Organism   Isoptericola jiangsuensis strain JSH01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019504..1030763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI703_RS04520 (ACI703_04520) - 1019556..1020884 (+) 1329 WP_313179491.1 HAMP domain-containing sensor histidine kinase -
  ACI703_RS04525 (ACI703_04525) - 1021295..1021711 (+) 417 WP_406234959.1 hypothetical protein -
  ACI703_RS04530 (ACI703_04530) - 1021853..1022863 (-) 1011 WP_406234961.1 AI-2E family transporter -
  ACI703_RS04535 (ACI703_04535) coaE 1023010..1023621 (-) 612 WP_406234963.1 dephospho-CoA kinase -
  ACI703_RS04540 (ACI703_04540) - 1023632..1024495 (-) 864 WP_406234965.1 prepilin peptidase -
  ACI703_RS04545 (ACI703_04545) pilC 1024504..1025763 (-) 1260 WP_313207607.1 type II secretion system F family protein Machinery gene
  ACI703_RS04550 (ACI703_04550) pilA2 1026120..1026530 (+) 411 WP_406234967.1 pilin Machinery gene
  ACI703_RS04555 (ACI703_04555) - 1026618..1028579 (+) 1962 WP_406234969.1 hypothetical protein -
  ACI703_RS04560 (ACI703_04560) - 1028572..1029018 (+) 447 WP_406234971.1 GtrA family protein -
  ACI703_RS04565 (ACI703_04565) - 1029015..1030559 (+) 1545 WP_406234973.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45664.13 Da        Isoelectric Point: 10.1590

>NTDB_id=1073974 ACI703_RS04545 WP_313207607.1 1024504..1025763(-) (pilC) [Isoptericola jiangsuensis strain JSH01]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKVKPKPLFGAAGKPVGPKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKLVDGIRTDIEGGSSLNEAISKYPVQFDELYRNLVRAGESAGVLE
TVLDTIASYKENIEALKGKIKKALFYPAMIMVVAFLVSTILLVWVVPQFEEVFTSFGADLPAFTKFVVGLSRFMVSWWLP
IVIVIIVAVVGTIMAYKRSPKMQHGLDRAILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQANLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGLVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1073974 ACI703_RS04545 WP_313207607.1 1024504..1025763(-) (pilC) [Isoptericola jiangsuensis strain JSH01]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAGGAACCCGTGGCGCGTAGCACCATGGAACTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAAGGCGAGCAGTTGGCCAAGAATGCCAATCTGCTGCGGGCCGAGCTGCGTCGAC
AGGGGATCAACCCTGGCCAGGTGAAGGTCAAGCCCAAGCCGTTGTTCGGGGCGGCCGGCAAGCCGGTGGGTCCGAAGGAC
ATCGCCTTCTTCAGCCGACAGATGGCCACCATGATGAAATCCGGTGTGCCCATCGTGTCGGCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGCTGGTCGACGGCATCCGGACAGACATCGAGGGTGGCTCATCCCTGAACGAAG
CAATCAGCAAGTACCCGGTGCAGTTCGACGAGCTGTATCGCAATCTGGTACGTGCCGGCGAAAGCGCGGGCGTGCTGGAA
ACGGTGCTGGATACGATTGCCTCGTACAAGGAAAACATCGAAGCCCTGAAGGGCAAGATCAAAAAGGCCTTGTTCTACCC
GGCGATGATCATGGTTGTCGCCTTCCTCGTCAGCACCATCCTGCTGGTCTGGGTGGTTCCGCAGTTCGAGGAGGTCTTCA
CCAGCTTCGGCGCTGACCTGCCAGCCTTCACCAAGTTCGTGGTTGGCCTTTCCAGGTTCATGGTGAGCTGGTGGCTGCCC
ATCGTCATCGTGATCATCGTAGCCGTGGTGGGCACGATCATGGCCTACAAGCGGTCCCCGAAAATGCAACACGGGCTGGA
TCGGGCGATCCTGAAGGTGCCGGTCATCGGCCAGATCATGCACAACAGTGCCATTGCCCGCTTCGCCCGCACCACGGCGG
TGACCTTCAAGGCGGGTGTGCCGTTGGTGGAAGCCCTGGGCATCGTGGCTGGCGCCACGGGCAACAAGGTCTACGAGGAA
GCCGTACTGCGCATGCGCGATGACGTCTCGGTCGGCTACCCGGTCAACATGGCCATGAAGCAGGCCAACCTGTTCCCGCA
CATGGTCATCCAGATGACGGGTATCGGCGAAGAGGCCGGCGCCCTGGATGCCATGCTGTTCAAAGTGGCCGAGTACTATG
AGCAGGAAGTCAACAATGCCGTGGACGCCCTCAGCAGCCTGCTTGAGCCGATGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCCTGGTCATAGCGATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

51.724

96.897

0.501
  pilC Pseudomonas stutzeri DSM 10701

52.778

94.511

0.499
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

51.637

94.749

0.489
  pilG Neisseria gonorrhoeae MS11

42.714

94.988

0.406
  pilG Neisseria meningitidis 44/76-A

42.105

95.227

0.401
  pilC Vibrio cholerae strain A1552

41.133

96.897

0.399
  pilC Vibrio campbellii strain DS40M4

40.943

96.181

0.394
  pilC Thermus thermophilus HB27

37.531

96.659

0.363

Multiple sequence alignment